Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00979 ATGGTGGACGGAGAGAAGAGTCACACCACTCTCACTGCTTTGGAATTGGGTCGGTTTGGAATATTTCAGTGTTGGTTGGTTTCTGATTTTGAATTGGTTGATGTGATATCTTTGTGCTTCAACATGGGTAGCTTATGTTCCAAGAGTTCAGCTGTAGAGGACAGCAAGGTAGATGCCACTAAGAAATTGCAATCGTATAGCACAAGGCCTTCCGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGAAGCCGGTGGGGCTAAAGACGTGATAATACATGGTGGTCATGTAAATGGTTCATTGATTGACAAGAATTCCAATGGTTCAGGGAGGTTGTATGGTGATCATGATGGGAAGAAGAAAATTGAGAAGCCTGAATTGACTGTTGTGGATCATATTGGCCCTGGAAGGATTCCAAAGGCTATAGAAGGAGAGCAAGTTGCAGCAGGATGGCCAGCATGGCTTTCTTCGGTTGCCGGTGAAGCTATTAAGGGATGGATACCACGGAGAGCGAATACTTTTGAAAAGTTGGACAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCAAGGGATGTGATTAACCGCAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTAAAGTTTATGGCAAGGGAAATTCATGTTCTGCGTATGCTTGACCATCCAAACATAATAAAATTGGAGGGCTTGGTAACGTCACAGATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTAGCATCAAATCCTGACATCAAGTTCTCTGAAACACAGCTAAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTATCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAATCTTAAAAATAGCTGATTTTGGTTTGGCGAGTTTTTTTGATCCCCACCACAGCGTCCCATTGACAAGTCGTGTAGTAACCCTATGGTATAGGCCACCAGAACTTTTACTTGGAGCAAATCGTTATGGGGTTGCAGTAGATTTGTGGAGCACTGGTTGCATACTGGGTGAACTATATACTGGAAGGCCCATTTTACCAGGAAAAACAGAGGTTGAGCAATTGCATCGAATTTTTAAACTTTGTGGCTCACCATCTGATGACTATTGGCTTAAATTGCGGCTGTCACATTCAACAGTATTCAGGCCACCACACCATTATAGGCGATGTGTTGCAGAGACATTTAAGGACTACCCATCTACTGCTGTAAAGCTTATAGAGACTCTACTTTCTATAGAGCCAGCACATAGAGGGACTGCAGCAGCTGCGCTAAAAAGTGAGTTCTTTACATCAGAGCCTCTGCCTTGTGATCCATCAAGTTTACCGAAATATGCTCCCAGCAAGGAGATTGATGCTAAATTACGAGATGAAGCCAGAAGGCAAGGAGCTGTTGGAGGTAGGGACCAAAAAGTTGCCTCAGGAGTTAGACAAGAAAAAGGACATAGGACCAACGTCACAGCAAAAGACAATGCTGAACCAGGTTTATCAGTACAGCAAGGACGTTATTCCAGCTCAAAGAACCGAAGTGAATTTTACAACCCTCATAGGGGAGCAGTGCCTGGGATTCTGGTTTTCCCAAACAGACAGTCAGAAGATGCTAAAGAAATGGAAAATAATTCTTCTGGGCATATTTATAAGAGGCCATCACATTCAGGCCCATTGGTTCCTGGTTCTGGTTGGGCAAAAGGTGCGAAGGAAGTTGATGATGTGCCTCCTGTTTCAATCAGAGGGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGAACTTCGTTGCCAGAAGACCAGGAGGATAAACCAGTTCAGTTGCACCACAGAAAACCGATTGAAGTAAGAAAATCCATGGAGTCTACTAACGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCAATCAAATTGAAAGTAGGAGGGTCCCCAGCGAAAAATCAACTCCGGGTGGGCGCGAGTCGATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTGTCAGCAAACAATATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAAGAGTTTTCAAGACGAGCAAGAATTGACAAGTCAAGAGCAAGAGGTGAGAAAGTTCGTGCAAAGCGGAAGTGGTGA 2223 0.435 MVDGEKSHTTLTALELGRFGIFQCWLVSDFELVDVISLCFNMGSLCSKSSAVEDSKVDATKKLQSYSTRPSELNVLRLNSTRRVEAGGAKDVIIHGGHVNGSLIDKNSNGSGRLYGDHDGKKKIEKPELTVVDHIGPGRIPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRRANTFEKLDKIGQGTYSTVYKARDVINRKFVALKKVRFDNLDPESVKFMAREIHVLRMLDHPNIIKLEGLVTSQMSRSLYLVFEYMEHDLTGLASNPDIKFSETQLKCYMQQLLSGLDHCHSHGILHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANRYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLSHSTVFRPPHHYRRCVAETFKDYPSTAVKLIETLLSIEPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYAPSKEIDAKLRDEARRQGAVGGRDQKVASGVRQEKGHRTNVTAKDNAEPGLSVQQGRYSSSKNRSEFYNPHRGAVPGILVFPNRQSEDAKEMENNSSGHIYKRPSHSGPLVPGSGWAKGAKEVDDVPPVSIRGNLSKLSGLVASRTSLPEDQEDKPVQLHHRKPIEVRKSMESTNGSESRRRQDQKRIVDLNQIESRRVPSEKSTPGGRESMGNKIYLSGPLMVSANNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAKRKW 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00979 740 CDD STKc_CDK9_like 176 460 - -
Spst11g00979 740 SUPERFAMILY Protein kinase-like (PK-like) 170 468 IPR011009 -
Spst11g00979 740 Gene3D Phosphorylase Kinase; domain 1 163 258 - -
Spst11g00979 740 MobiDBLite consensus disorder prediction 721 740 - -
Spst11g00979 740 MobiDBLite consensus disorder prediction 520 542 - -
Spst11g00979 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Spst11g00979 740 MobiDBLite consensus disorder prediction 623 672 - -
Spst11g00979 740 ProSitePatterns Protein kinases ATP-binding region signature. 182 205 IPR017441 GO:0005524
Spst11g00979 740 SMART serkin_6 176 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00979 740 PANTHER CELL DIVISION PROTEIN KINASE 174 466 - -
Spst11g00979 740 MobiDBLite consensus disorder prediction 489 546 - -
Spst11g00979 740 Gene3D Transferase(Phosphotransferase) domain 1 259 498 - -
Spst11g00979 740 FunFam probable serine/threonine-protein kinase At1g54610 259 499 - -
Spst11g00979 740 MobiDBLite consensus disorder prediction 622 690 - -
Spst11g00979 740 Pfam Protein kinase domain 176 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00979 740 FunFam probable serine/threonine-protein kinase At1g54610 163 258 - -
Spst11g00979 740 MobiDBLite consensus disorder prediction 503 517 - -
Spst11g00979 740 Coils Coil 701 721 - -
Spst11g00979 740 ProSiteProfiles Protein kinase domain profile. 176 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00979 Spst-Chr11 34009774 34015439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00979 168 502 Core Cell Cycle Gene Families AT5G10270 47.863 9.78e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst11g00979 Pkinase 3.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00979 - - gmx:100807590 1256.51