Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00975 ATGGATCACCTTGGAATTCAACCCTCTTCAACCAAGGTTGAAAGAAGGCTCGTTGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTACAATAAACTCAACTCTCTTCTCCCTAACTACAACCCCAAGGAAGCAATACCACTGCCTGACCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCGAAGGTGAAGGTGGCACAAGAGAAGAAAGAGAGTTTGCAGGGTGTTAGGAAAAGATCCCATGCTTGCTTATCCAATAACAGTTCTAATTTTTCTACAACACGTTTCTCAAAATCTCCACAACTTGAGATCAACGAAGTGGGTTCCTCCCTACAAGTTGTTCTGACTTGTGGGATAGACCAGCAGTTCATTTTCTCTCAAATCATTAGAATGCTGCATGAAGAGAACATAGAGGTTAGAAGTGCCAATTCCTCACTTATCGGAGACTCGGTGCTGCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTCGGAGCCATTAAAGTAAGTGATAGGTTGAAAAGGTTGGTGAATGGATCCTCCAGTGACGTGGAAACACAGCACGAATGGTGGGATTTTGAAATTGCTAATGTTGATATCTGGGGTTTCTAG 627 0.4258 MDHLGIQPSSTKVERRLVEKNRRNQMKILYNKLNSLLPNYNPKEAIPLPDQVDEAINYIKSLEAKVKVAQEKKESLQGVRKRSHACLSNNSSNFSTTRFSKSPQLEINEVGSSLQVVLTCGIDQQFIFSQIIRMLHEENIEVRSANSSLIGDSVLHVVHAEIPQSFLQFGAIKVSDRLKRLVNGSSSDVETQHEWWDFEIANVDIWGF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00975 208 Gene3D - 6 92 IPR036638 GO:0046983
Spst11g00975 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Spst11g00975 208 Coils Coil 52 79 - -
Spst11g00975 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 79 IPR036638 GO:0046983
Spst11g00975 208 SMART finulus 16 68 IPR011598 GO:0046983
Spst11g00975 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 182 - -
Spst11g00975 208 FunFam Transcription factor bHLH162 4 88 - -
Spst11g00975 208 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00975 Spst-Chr11 33987299 33988369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00975 10 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.333 2.92e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g00975 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00975 - - vun:114170573 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00975 11 33987299 33988369 Spst11g00975 11 33987299 33988369 ECH
Spst5g00882 5 8114123 8114996 Spst11g00975 11 33987299 33988369 PCT