Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00971 ATGGCAATGGAGGGTATTGACAAGGATGAGAACAGAAAGCGCCGAAGAAAGATGTCAAGAAAGCTTGAAGTGGATGCAAAAGTAGAGGTGAGGAGTATGGATATTGGGTTTCAAGGATCATGGCACCCTGGGACAGTTACTCTGTGTGAGGATTTGCAACGACATGTCAGATATAAAAATAGTTTGGTTGTTGACAATGAGGTTGATTATCTTGAGGAGGTAGTGATTGTTTCAAAAACTTTGGATGGTTATATTGAATCTACAAACTGCTATGCACGCGGGTCCATTAGGCCATTGCCTCCTTTGGTTGAGTTTGATAGGGGGGACCTTATATTTGGTTTGTGTGTTGATGTGAAGTACCAGGAATCTTGGTGGGAAGGTGTAATATTTGACCACTGTGATGGAATGGACATGAGGTGTGTGTTTTTCCCTGATTTGGGTGATGAAATGTTGGTTGGAATTCATCAGTTGCGGATCACTCAGGACTGGAATGAAATCACCGAGGAGTGGACCCGGCGAGGGAACTGGGTGTTTCTTGATTTGGTTGAAGAGCAGAAGAGGAAATTGTTTGTCTCAGTTTCGGTTAAGCAGATTTGGTATGATATACGCATAAAAGAGAAATTTGAGGCGATTAGAGAGTGGACATGTAATTTTAAGTACTTGTGGACAGACTTGATAATGGAGGTAATTAATCATTACTTATCTCCTACAGTAAAGGAAAATTCCTCTGTCCTAAACCTTCCAGGGAGTTTATTAAATGAAGCACCACAGCAGGAATTTGCTGAAGGTATGGTTAATGTTGACATGAACATGATTTGGCCTGATGAGGAAACTGTTGTGCAGAAAAAACATGTCCCTCCTGTTAAAGAGACCTTACCCGAATTTCAAAATGAAATTAGTCCCTGTAATGATAGGCCTTTTGAAGAAAGTGTAGAAGAAAGATCCTCAAGTCATTTAAGGTCCACTTATTGGAAACCTGTGAAGTTTTCTAAGGTTGAGTTATGCCCTGATGCAGTTGGGGAATATCCACTTGCTTCTAAACGCGATGTCAAGGCATTTTGGATGGATAAGTTACAAAAACATCTTGTATGTATTGGATGGAAAATCGAATGGTCGAATAGATTAAATGTTAAACGTTACAAGTATATTTCCCCTCCTAGGCAGGGCCAAAAGTTTTACCTTTCACTCCTTGAAGTCTGTAAAGCTATGAAACAGGACCCCAGCATGAACTCCTTGCATCTCCAAAATGACCGGAGTATAATGCATCCTACGGTTGACTGTCATCTTTCAGATGTCCCTGCAAATCCAGTACAAAATATTCAGAACCCGCATATCTTTCCTCCTCCATCTTCTTCAGTTGAAGATGCACCTGATTGTTGTCCTGGGGCTGTCGTGCAGTATTATTGGAAACCTGTGAAGTTTTCTGAGGTTGAATTATGCCCTGATGCTGTTCGGGAATATCCACTTGCTTCTAAACGCGATGTCAGGGCATTTTGGATGGACAAATTACAAAAACATCTTGTATGTATTGGATGGAAAATTGAGTGGTCAAATAGATTCAATGTTAAACGTTACAAGTATATTGCCCCTCATAGGCAGGGCCAAAAGTCCTACCTTTCACTCCTTGAAGTCTGTAAAGCTATGAAACAAGACTCCAGCTTCAACTCCTTGCATCTCCAAAATGACCGGAGTATAATGCATCCTACGGTTGATTGTCATCTTTCAGACGTGCCTGCTAATCCAGCAGAAAAAATTCAGAATCCAGATACCTTTCCTCCAGTTGAATGTACACCTGATTATTGTCCTGGGGCTGTTGTGCAGTACTATCGCTTATATATATCCAATAAGAGCCGGGCTGAAAAAAGAGAATGGATTCTAAAGGCAAAGAAGCATCTATTAGCAGAAGGATGGGTTTTTGACTATCCACCTCCACTAAATAAGAGAAGGGGAATAATATACATGTCTCCGAAAAATCGGAAATTCTCAACACTCCATGCAGCTTGCAAATTTTGTATTGAAGAAAGTATTCCTAATAGGAACCTTGAATTGCAGTCGATGGATGAAGGTGCTTCTAGTTGTAAATCTAATCAAAAGAAGAAAAGAGAGAGGTATTTAAAGGCTAACATACCTAAGTGCCAAAGCAAGGGATTACCTCAACAGGTGCTAAGGTCAAATAAGAGGGTGCAAAAGGTGTCTGGCCCTGCTAATTTACAGCATAAGCCTCTAAATATTCCGTCTTATTTGATAGACAACAACAACATCTTACCAAGGTCTAAGGTTTATTATAAAACAAAAGGCAGACACAGCATAGTCCGTACTTTGGCCGAGGGGAAAATAACTCACGACGGAATCAAGTGTAACTGTTGCCTTGCATTATACAGTTTTGCTGGATTTGAAAACCATGCTAGTGGCCTCAGTACCTGCAAACCCTCTGCTAGTATCTTTTTGCAAGATGGTAAATCACTCTTGGATTGCCAGATACAAATGATGCAAGATCACAGGAAATGGGAAGCTAGTGGAAAATCATTAAACGATATAGCTGAGAATGACTACATTTGTTCAGTATGCCACTATGGTGGTGAGCTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATATCCCCGAAGGTGACTGGTTTTGTCCATCATGTCGATGTGGGATTTGTGGCCAAAGGAAAATTGATGGAAATGAGGTTGAACATTTCCTTTCTTGCGTACAATGTGAACATAAATATCATGTTAGGTGCCTCAAACAGGGAGCTGCAGATACATCAAGCAATAATGGAAACTGGTTCTGTGGAAAAGGCTGCGAAAAGGTATATGAGGGCCTTCATAAATTATTAGGAGAGCCAGTTCCAGTGGCTAACAATCTAACTTGGACATTGGTGAAGTTTATCGACCCCAACAGTTCTGATCTTGGTAATGTTGAGACTGACTTAATGGCAGAAAGTTACAGCAAACTCAATCTTGCTCTTTCGTTAATGCATGAATGTTTTGAGCCCCTGAAGGAATCCTTGACTAGCAGAGATCTAGTGGAAGATGTTATATTCAGCAGATGGTCAGAGCTTAATCGAATAAATTGCCAGGGTTTCTATACTGTTCTACTTGAGAGAAACGAAGAACTGATTAGTGTGGCAACTGTTAGGGTTCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTGTAATAGATGAGCTTGAAAAGAAACTCATGCAATTAGATGTGGAGAGGCTGATTTTGCCAGCGGTTCCTAGCGTGCTAGAGACATGGACAGGCTCTTTTGGCTTTGCAGAGATGACTAATTCTGAGAGATCTCAGTTTCTTGACTATACTTTCCTAGATTTTGAGGGTACCATCATGTGCCAAAAGTTGTTGATTAACATTGGATCTTCAGATTCAGTTTGTTAA 3474 0.4059 MAMEGIDKDENRKRRRKMSRKLEVDAKVEVRSMDIGFQGSWHPGTVTLCEDLQRHVRYKNSLVVDNEVDYLEEVVIVSKTLDGYIESTNCYARGSIRPLPPLVEFDRGDLIFGLCVDVKYQESWWEGVIFDHCDGMDMRCVFFPDLGDEMLVGIHQLRITQDWNEITEEWTRRGNWVFLDLVEEQKRKLFVSVSVKQIWYDIRIKEKFEAIREWTCNFKYLWTDLIMEVINHYLSPTVKENSSVLNLPGSLLNEAPQQEFAEGMVNVDMNMIWPDEETVVQKKHVPPVKETLPEFQNEISPCNDRPFEESVEERSSSHLRSTYWKPVKFSKVELCPDAVGEYPLASKRDVKAFWMDKLQKHLVCIGWKIEWSNRLNVKRYKYISPPRQGQKFYLSLLEVCKAMKQDPSMNSLHLQNDRSIMHPTVDCHLSDVPANPVQNIQNPHIFPPPSSSVEDAPDCCPGAVVQYYWKPVKFSEVELCPDAVREYPLASKRDVRAFWMDKLQKHLVCIGWKIEWSNRFNVKRYKYIAPHRQGQKSYLSLLEVCKAMKQDSSFNSLHLQNDRSIMHPTVDCHLSDVPANPAEKIQNPDTFPPVECTPDYCPGAVVQYYRLYISNKSRAEKREWILKAKKHLLAEGWVFDYPPPLNKRRGIIYMSPKNRKFSTLHAACKFCIEESIPNRNLELQSMDEGASSCKSNQKKKRERYLKANIPKCQSKGLPQQVLRSNKRVQKVSGPANLQHKPLNIPSYLIDNNNILPRSKVYYKTKGRHSIVRTLAEGKITHDGIKCNCCLALYSFAGFENHASGLSTCKPSASIFLQDGKSLLDCQIQMMQDHRKWEASGKSLNDIAENDYICSVCHYGGELILCDKCPSSFHKTCLGLEDIPEGDWFCPSCRCGICGQRKIDGNEVEHFLSCVQCEHKYHVRCLKQGAADTSSNNGNWFCGKGCEKVYEGLHKLLGEPVPVANNLTWTLVKFIDPNSSDLGNVETDLMAESYSKLNLALSLMHECFEPLKESLTSRDLVEDVIFSRWSELNRINCQGFYTVLLERNEELISVATVRVHGKKVAEIPLVGTRLQYRRHGMCRIVIDELEKKLMQLDVERLILPAVPSVLETWTGSFGFAEMTNSERSQFLDYTFLDFEGTIMCQKLLINIGSSDSVC 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00971 1157 PANTHER PHD FINGER PROTEIN 12 607 1151 IPR042163 GO:0003714|GO:0045892
Spst11g00971 1157 CDD NAT_SF 1042 1102 - -
Spst11g00971 1157 SMART PHD_3 894 945 IPR001965 -
Spst11g00971 1157 SMART PHD_3 852 893 IPR001965 -
Spst11g00971 1157 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 984 1147 IPR000182 GO:0016747
Spst11g00971 1157 SUPERFAMILY FYVE/PHD zinc finger 841 898 IPR011011 -
Spst11g00971 1157 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1000 1107 IPR016181 -
Spst11g00971 1157 Pfam PHD-finger 852 894 IPR019787 -
Spst11g00971 1157 Pfam Tify domain binding domain 777 829 IPR032308 -
Spst11g00971 1157 ProSiteProfiles Zinc finger PHD-type profile. 850 895 IPR019787 -
Spst11g00971 1157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 895 948 IPR013083 -
Spst11g00971 1157 Pfam Agenet domain 26 101 IPR008395 -
Spst11g00971 1157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 844 894 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00971 Spst-Chr11 33954754 33966614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00971 31 420 PHD Transcription Factor Family AT5G58610 35.154 5.35e-57 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst11g00971 Agenet 1.1e-11 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00971 - - pvu:PHAVU_006G069100g 1632.46