Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00967 ATGTCTCTGCAGGCTCTGAAGGAAACTCTGCGACCTTGTTCAACCCTAAAAACCTCTTCCAATTCCTCTTCTTCAATTACCCAAACACAGCGTAGTTCAATTCTTCGCGAATACGATTCCCTCTTCCCAATCCATAGAAAACCTCCTAAATCCTCTCTTTCCCACCAGCTTCGCCGCCTTAACGACTCACTGTCCCAATCACACTCCACAACGCAAGAAGACGAAAAAGAAGAACTTCTACAAGAAGAAGAACCTGAGATAGAAAGAGCGAAATTTGCTTCAGTTAAATTGCCACAGTTTCAATTTGATCACACTGGACCCTTCGAGCCTCTCGTCCTGTCTTCGCATGGAGAGTCTCCTCTGGTTGAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAACATCAAAGAGAGGGTGTGAAGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAAGGACATTCTACTCTAAATGAAAACCATATAGAGAAAAGAAACCCTGCATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAGTGGTCGAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACGTTCAGGATTCATGGAAGTTCCTTGTCAGATGTCAAATGGAATGTTGTGATTATCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTATATAAAGCATGTTCAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTATAATGCAAAATAAGATAATGGAATTGTTCAATCTCTTTGACTGGGTTTCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTACAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTGATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATGTGCAAAAACGTGTTTACAGAAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAATGTTGCAAGAGGATAGTGCCAGATGGAGTTATTTGGCCTTATCTGCATAGAGATAATCCTGATGGCTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTAATCAAACCGAACCCCAGAGATGACCCTGACAAACAAAGTAAGGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATACTGATTTAGTTGGTGGGAACACACAAAATGAAAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATTCGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATCTACGTCAGTCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAGGTATTCTTGATATCAACACGTGCTGGTGGGCTCGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGATCCTTTCGGTTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTAGAAGAACTTGTTTACTCTCGTCAGGTGTATAAGCAGCAACTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGTTATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCGGATAAGCTGTTTACCAGTGAAATCATTGAATTGCATAAAGAACGTGGACATGAAACGGAACAACTGGAGAAAGTAAATCTGTCAGAAGAAACGGGTTCATCGGTATCAGAGTCAGAAACCAGATTATGTCGCAAGTCTGCGGGGGCTGCAACAAGTAAACCAGATCTTGAAGACCTTGGCATTGTATATACTCATCGCAACGAAGACATTGTCAACTTTGGACCTGGGATTCAAGGGAAAATAAATGCCAACATCCCATCAAATGATAGCCTAGTCATGCCAACTTTGGACCATCAAAGAAAAAAGCCAGAAAAAAGGAAAGTTCCTTTGATTGATGATATGAAGAGAATCCAATATAAGCTCCTTGCTCGATCTATTGGCATGGGAGAGCTTGCTTTTAGCAAATGGTTACTATCAGCTACTCCACTTGAGAGAGAAAAAGTGCTTATTGATTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2589 0.416 MSLQALKETLRPCSTLKTSSNSSSSITQTQRSSILREYDSLFPIHRKPPKSSLSHQLRRLNDSLSQSHSTTQEDEKEELLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLVLSSHGESPLVEVPASINCRLLEHQREGVKFLYGLYKNNHGGMLGDDMGLGKTIQAIAFLAAVFGKEGHSTLNENHIEKRNPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTFRIHGSSLSDVKWNVVIIDEAHRLKNEKSKLYKACSEIKTLRRYGLTGTIMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLDKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDDPDKQSKDAEFAAAVFGPDTDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKERGHETEQLEKVNLSEETGSSVSESETRLCRKSAGAATSKPDLEDLGIVYTHRNEDIVNFGPGIQGKINANIPSNDSLVMPTLDHQRKKPEKRKVPLIDDMKRIQYKLLARSIGMGELAFSKWLLSATPLEREKVLIDYKKKKKMPNG 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00967 862 Pfam SNF2-related domain 147 405 IPR000330 GO:0005524|GO:0140658
Spst11g00967 862 MobiDBLite consensus disorder prediction 62 84 - -
Spst11g00967 862 Pfam Helicase conserved C-terminal domain 521 633 IPR001650 -
Spst11g00967 862 MobiDBLite consensus disorder prediction 1 32 - -
Spst11g00967 862 SMART ultradead3 128 323 IPR014001 -
Spst11g00967 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 315 IPR014001 -
Spst11g00967 862 PANTHER SNF2/RAD54 FAMILY MEMBER 23 791 - -
Spst11g00967 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 365 IPR027417 -
Spst11g00967 862 CDD SF2_C_SNF 515 644 - -
Spst11g00967 862 MobiDBLite consensus disorder prediction 721 741 - -
Spst11g00967 862 Gene3D - 110 364 IPR038718 -
Spst11g00967 862 MobiDBLite consensus disorder prediction 727 741 - -
Spst11g00967 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 688 IPR027417 -
Spst11g00967 862 Gene3D - 377 733 IPR027417 -
Spst11g00967 862 SMART helicmild6 550 633 IPR001650 -
Spst11g00967 862 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 677 IPR001650 -
Spst11g00967 862 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 113 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00967 Spst-Chr11 33919267 33925260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00967 151 674 RAD5 or RAD16-like Gene Family AT5G05130 25.574 6.81e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst11g00967 SNF2_N 5.6e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00967 K20098 - gmx:100781003 1526.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00967 11 33919267 33925260 Spst11g00967 11 33919267 33925260 ECH