LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g00960	ATGACTGCGGCCACCACGCTCCGCTACTCACCCCATTTGACAATCGCGGTTGACACTTCCGATGATCCTCTCTTACCCTTCCTCTGGTCTATAAAAAAGGCGCTAGAAGCATCTGACAATTACGCCCAGAATCTCAATATCTTACTCAGAGATTGCATCCGGAACTTCAAGAACAATGACCGGTACCAAAACGACATCAGATTTCTCAAGATTTGGTTCCTCTATATGGGAGTTAGTGACGATTTTGACAGTGTTTTCAAAGAAATGCTGGACAGTAATGTATGTACCAAGAATGCTTCACTTTATGTGTGGTCTGCAAGTTTATTTGAGTTGAAGGGAAGATTGTGTGATGCCCTCTCCGTATATCAGCTTGGCATTGGCAGGAATGCGGAGCCCATTGAGTGGTTGAGGAAGGCGCGGACCTTATTTCTAAATAGAATTTATGAGGTACAGAATGCTGCTTCAAACCAGAAGGTTGATGATATAGAATCCATGAAATTGGAAAATAATGGCATTAACCCTTGGGACACTTCGACCATGGATGTCCTCTTAAAGAAGATACATCCTTTAATTATAAAATTTGATGGGTATCGTTCAAGCACTAAACCATACACAGGAAAAGTGGTCTTATCTGCGTTGAAGAATTCATCAAGGAATAAAGTTATTGAGATAGGTGGAATGAAGTATCTTATAAAGGGGTGTGCTGGACAGGGAGGTTTTGCCCGAGTATATAAGGCTAATATGATCAGTGATCCTGACAATGTTGTTGCTCTAAAGATACAAAAACCAGCTTTCCCTTGGGAATTTTACATTTATCGTCAGCTTGATCTGCGCATCTTAGAGAGAGAGAGGTCAAGTTATGGTTTTGCTCACCGAGTTCATCTCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACACTACAGGATGTGGTAAACTCGTATGTGGTCTTAAGAAAATCCGTGGAAGAAGTGTTATGCATTTATTACACAATTGAAATGTTAAACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGTTCTTGAACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGAATTGATCTGAAACTCTTTCCTGATCACACACTATTTAAGGGTGATTGCAAAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGGATAAGCCGTGGAAATTTCAGGCACGTCACCTCTTAAATTGCTCTACAAATGCAATGGAACTGATTATTTACTGCCTTTTGAGTTTCCCTTCTCTATCACCTGCTAACAGGTAG	1380	0.413	MTAATTLRYSPHLTIAVDTSDDPLLPFLWSIKKALEASDNYAQNLNILLRDCIRNFKNNDRYQNDIRFLKIWFLYMGVSDDFDSVFKEMLDSNVCTKNASLYVWSASLFELKGRLCDALSVYQLGIGRNAEPIEWLRKARTLFLNRIYEVQNAASNQKVDDIESMKLENNGINPWDTSTMDVLLKKIHPLIIKFDGYRSSTKPYTGKVVLSALKNSSRNKVIEIGGMKYLIKGCAGQGGFARVYKANMISDPDNVVALKIQKPAFPWEFYIYRQLDLRILERERSSYGFAHRVHLYSDCSILICDYLANGTLQDVVNSYVVLRKSVEEVLCIYYTIEMLNMVETLHGVGLIHGDFKPDNLLIRYARGDLTEDGFLNRSGPWCDQGLCLVDWGRGIDLKLFPDHTLFKGDCKTSGFRCIEMLEDKPWKFQARHLLNCSTNAMELIIYCLLSFPSLSPANR	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g00960	459	Pfam	Protein kinase domain	236	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst11g00960	459	Gene3D	-	11	164	-	-
	Spst11g00960	459	Pfam	Mad3/BUB1 homology region 1	14	126	IPR013212	-
	Spst11g00960	459	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	154	431	IPR015661	GO:0007094
	Spst11g00960	459	SMART	mad3_bub1_i	4	126	IPR013212	-
	Spst11g00960	459	SUPERFAMILY	Protein kinase-like (PK-like)	228	452	IPR011009	-
	Spst11g00960	459	ProSiteProfiles	BUB1 N-terminal domain profile.	11	169	IPR013212	-
	Spst11g00960	459	Gene3D	Transferase(Phosphotransferase) domain 1	227	451	-	-
	Spst11g00960	459	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	350	362	IPR008271	GO:0004672\|GO:0006468
	Spst11g00960	459	SMART	serkin_6	229	454	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst11g00960	459	ProSiteProfiles	Protein kinase domain profile.	229	459	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst11g00960	223	362	MAP Kinase Kinase Kinase Kinase	AT3G15220	28.082	2.36e-06	48.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Spst11g00960		Pkinase	1.6e-08	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g00960	K02178		-	gmx:100802272	749.584