Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00955 ATGACCACCATTTGTTTAGAGCACAAATTCCAACTTCAACCCTCCCACCAACTTCTCTCCCTCAAGAAATCCCTCAGGGACATTGATATCCCTCCAAGGAAGCTCCTCAGCCGCCGCTCAGCCCTCCTTCACGACGGCGCCGGCGATATTTTTTCCGACGACACCCTCCTCCACAAATACCTTCCCCACAGCAAATCCATGGATTCCGATGACTCTGATGACAATGGAGACCCTTATGCCTCTGATGAATTCCGCATGTTCGAGTTCAAGGTCCGGCGCTGCACTCGCAGCCGGAGCCATGACTGGACAGATTGTCCCTTTGCACATCCCGGCGAGAAGGCTCGCCGCCGCGACCCTCGCCGGTTTCATTACTCTGGGACTGTCTGTCCAGAATATCGCCGCGGGCAGTGTAGTCGTGGCGATGCATGTGAGTTCTCTCATGGGGTGTTCGAGTGCTGGCTACATCCTTCTAGGTATAGAACTGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTCAGGGTTTTGCCTCCCCAAGACAATATCAAGAAGAAAAAGGGCACCGATATGAGCCCTCATAATACTAACCATTGCTGTTTTTTTTGTCATTGTTCATCCACTTGTTCACCAACTTCTACTTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCCCCCTCTTCCTCTCCCTCCTCCCCTTCCCCTTCTAGGTTTGAGACTAGCCACCATCATGGTGTTGTGAGCTACAAGGATGTGTTCTCTGAGCTTATGTGCTCCATGGAGGGTTTGAATTTCGGTGAGGCTTCATCTGTGTCTGCTTCTAAGCCTCACAGTCTGTCTTGGCTTGATGTCCCTGAGGATCATAAACAGTTCAACACTCATTCACCGACCATCACTGCTACTTATGGAAGCTTTTCCAAGAATGGGAATGGAAGATTTTTGAGGGAAGAAAGTGGGGTTGCTGATGATGTCATTGCCCCAGATCTCGCGTGGGTGAATGACTTGCTGATGTAG 1047 0.5014 MTTICLEHKFQLQPSHQLLSLKKSLRDIDIPPRKLLSRRSALLHDGAGDIFSDDTLLHKYLPHSKSMDSDDSDDNGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDNIKKKKGTDMSPHNTNHCCFFCHCSSTCSPTSTLFGMSHFSPPLSPSSSPSSPSPSRFETSHHHGVVSYKDVFSELMCSMEGLNFGEASSVSASKPHSLSWLDVPEDHKQFNTHSPTITATYGSFSKNGNGRFLREESGVADDVIAPDLAWVNDLLM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00955 348 Gene3D - 123 187 - -
Spst11g00955 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 148 IPR000571 GO:0046872
Spst11g00955 348 FunFam Zinc finger CCCH domain-containing protein 66 81 149 - -
Spst11g00955 348 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Spst11g00955 348 PANTHER UNKEMPT FAMILY MEMBER 46 347 IPR045234 -
Spst11g00955 348 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Spst11g00955 348 SMART c3hfinal6 123 149 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00955 Spst-Chr11 33835531 33836577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00955 79 244 C2H2 Transcription Factor Family AT5G12850 49.405 4.24e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst11g00955 zf-CCCH 1.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00955 K23047 - gmx:100820375 533.487