Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00953 ATGGTCGCCAAGGACAAAACCGTCATCAAGAACAAGAAGTCTAGCAATGCCGCCGACGAGGTCCACTACCGCGGCGTCCGCAAGCGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCTGGAAAGAAATCCCGCGTCTGGCTTGGCACCTTCGACACAGCCGAGGAAGCCGCTAAAGCATACGATGCCGCCGCCCGCAACTTCCGCGGCCCTAAAGCCAAAACCAACTTTCCCCCTCTCCCCGACACCACCACCACCACCAATAACCTTAAACTTAACCTTAACAACAACAATAACAACCTTAACTCCCACAAAAACAACGGTAGCAGCAGCAGCAGCCCCAGCCAGAGCAGCACCGTCGAGTCCGCCACCCCGGAGCGTGACGTCACGCGCCGCGCCGCTCCCGCCGTCATCGACCGCTTTCCCTTCCTCCCGATCCAGCAGCAGCTCCTCGTTACCCCGGTCACTCCCATGCGCCCGGTTTTCCTCCTCGACCGGGCCCATTACCTCACCCACCAATTCCCCTTTCGGTTCGAACCGGCCCCGGTTCAGAGCGACTCCGACTCCTCATCCGTCGTTGATTGTCAACCCAAAAGAGAACTCAATCTCGATCTTAACTTGGCTCCGCCTATGGATTATTAA 645 0.5922 MVAKDKTVIKNKKSSNAADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDAAARNFRGPKAKTNFPPLPDTTTTTNNLKLNLNNNNNNLNSHKNNGSSSSSPSQSSTVESATPERDVTRRAAPAVIDRFPFLPIQQQLLVTPVTPMRPVFLLDRAHYLTHQFPFRFEPAPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00953 214 MobiDBLite consensus disorder prediction 71 132 - -
Spst11g00953 214 Coils Coil 88 108 - -
Spst11g00953 214 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Spst11g00953 214 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Spst11g00953 214 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Spst11g00953 214 MobiDBLite consensus disorder prediction 1 21 - -
Spst11g00953 214 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Spst11g00953 214 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Spst11g00953 214 MobiDBLite consensus disorder prediction 79 125 - -
Spst11g00953 214 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Spst11g00953 214 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Spst11g00953 214 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Spst11g00953 214 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Spst11g00953 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00953 Spst-Chr11 33815077 33815721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00953 20 212 AP2-EREBP Transcription Factor Family AT5G44210 47.716 5.81e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst11g00953 AP2 8.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00953 K09286 - gmx:100775465 264.233