Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00946 ATGCTTGCGGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACAAAGGAGAGATGGAAGGTTTCTCGATGGCAACAGCAACAACATCAGATGATGTTGACTTTGGTGACCTTTCTGAAGGGGGCCTGTTGGAGAGCATCAACTTTGACGACCTCTTCGTCGGCATCGACATTGATGGAGATGTCTTGCCGGATTTGCAGATGTTCGGTGAGTTCTCTGTCAGTGCCCGAGAAGAGTCATCGGAAATGAACTCATCATCGGCGAATAGCAAGGTGGAAAATGATAAAAAATGTGTTACTACTGCTTCAAAGAAGGAAGAGGAAAATAAAACTTCTTGTGCTGCTTCAGATCAAGACTTGGGGTCAAACCGAAGAGAGGAGATAGTGAGCAAGAGTGGTGAATCCGTGGTGGTGAATCCGCCTGCAAAGGAAGGTGGAAAAGGAAAAAAATCTACATCAGGTCAACCGAAGAGTAATAGTAGCAGTAATAATTCTCAGGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCATAGGCGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAAGCAGTGCCTTCCAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAATATTGCTAGTCACCTTCAAAAATATAGATCTCATAGGAAACACTTGCTGGCTCGTGAGGCTGAAGCAGCAAGTTGGAGTCAAAGGAGGCACTTCTATGGTGGTGGTGGAAGTGGAGGGAAGAGAGAGAGTAGTCCATGGCTAGCACCCACCATGGGATTCCCTCCTCCAATGGCCACAATGCACCATTTTAGACCTCTACACGTGTGGGGGCACCCCTTCACGGACCAGTCCTTCGTGCGCATGAGGCCTAAACATCTTCCACCTTCACCACCACTTTCGTGGCCACCAGCTGCAGCACCCCACGACCCTTCGTTTTGGCATCAACGGGCTCCAAATGCACTGATAACAGGAACAGCATGTTTTCCACGACCTCTGACACCAACGGGTTTTGGAAGTCCCCTTGTCCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCACACCATTGCCATCCATACTCCCCGACCTCTATTCGATTTTCATCCTTCAAAAGAGTGCATAGATGAAGCTATTGGAGATGTTTTATCAAAGCCATGGCTACCCTTACCTCTTGGACTGAAGGCTCCAGCACTTGATAGTGTGATGAGTGAATTGCAGAGACAAGGGATTCCAAACATTCCACCCTCTAGTGCTTGA 1278 0.4797 MLAVAPLRSIKDEKNKGEMEGFSMATATTSDDVDFGDLSEGGLLESINFDDLFVGIDIDGDVLPDLQMFGEFSVSAREESSEMNSSSANSKVENDKKCVTTASKKEEENKTSCAASDQDLGSNRREEIVSKSGESVVVNPPAKEGGKGKKSTSGQPKSNSSSNNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRHFYGGGGSGGKRESSPWLAPTMGFPPPMATMHHFRPLHVWGHPFTDQSFVRMRPKHLPPSPPLSWPPAAAPHDPSFWHQRAPNALITGTACFPRPLTPTGFGSPLVPGIPPHAMYKADHTIAIHTPRPLFDFHPSKECIDEAIGDVLSKPWLPLPLGLKAPALDSVMSELQRQGIPNIPPSSA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00946 425 MobiDBLite consensus disorder prediction 97 113 - -
Spst11g00946 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 170 224 IPR006447 GO:0003677
Spst11g00946 425 MobiDBLite consensus disorder prediction 76 173 - -
Spst11g00946 425 MobiDBLite consensus disorder prediction 77 96 - -
Spst11g00946 425 SUPERFAMILY Homeodomain-like 168 227 IPR009057 -
Spst11g00946 425 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 424 IPR044825 GO:0003700|GO:0045893
Spst11g00946 425 MobiDBLite consensus disorder prediction 151 170 - -
Spst11g00946 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 226 IPR017930 -
Spst11g00946 425 Pfam Myb-like DNA-binding domain 173 222 IPR001005 -
Spst11g00946 425 Gene3D - 167 228 - -
Spst11g00946 425 FunFam Two-component response regulator 166 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00946 Spst-Chr11 33752654 33756974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00946 1 344 G2-like Transcription Factor Family AT5G44190 40.921 2.57e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst11g00946 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00946 - - gmx:100799248 600.127