Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00940 ATGACTCAGTGCAGTGACCCAGAAAACAATCATCATAACAGCATAGTGGAGGGACGAAAGGATAGCCTAATTAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGAACAGGGAGGTGGAATTCATGACTTACCTGGACTTCCTGCTGGGGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTGCGATCTGATATTCACAAGCTTCATCCGCTAATTGATGAGTTCATTCCCACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGTTTGATCCGCCATTTCTTTCACCGGCCTTCCAAGGCATACACCACAGGAACAAGGAAAAGGAGAAAGGTGCATTCAGATGAAGATGGCAGTGAGACACGTTGGCACAAAACAGGCAAAACTAGGCCAGTCTTCAACAGTGCCAAGTTGAAAGGGTATAAGAAAATCCTTGTACTTTACACAAACTATGGAAAGCAGAGAAAGCCTGAGAAAACAAACTGGGTGATGCACCAATACCACCTTGGCAGTGATGAAGAGGAAAAAGAAGGAGAGTTAGTGGTGTCTAAAGTTTTCTACCAAACACAGCCTAGACAGTGTGGTTCCCTCATGAAAGACTCATCAGTTCCTGGGAAACATCTGAAGGGTCAAAGTGTGCATGAGGTGATCAATAACAAAAACAATAACAATGGATTTGTTGAGTACTACCATTCAAATTTCATCTCATTTGATCAAGGTGGCCAACATAGACCAACCACTGCTCAGGTAATTTCCCATTTTCCTGTCCATGAAGGTGCTCCTTTCAACATTCCTTGA 858 0.4289 MTQCSDPENNHHNSIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVFNSAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSVPGKHLKGQSVHEVINNKNNNNGFVEYYHSNFISFDQGGQHRPTTAQVISHFPVHEGAPFNIP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00940 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 229 IPR044799 GO:0003700
Spst11g00940 285 MobiDBLite consensus disorder prediction 123 146 - -
Spst11g00940 285 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Spst11g00940 285 FunFam NAC domain-containing protein 73 58 212 - -
Spst11g00940 285 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Spst11g00940 285 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Spst11g00940 285 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
Spst11g00940 285 MobiDBLite consensus disorder prediction 128 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00940 Spst-Chr11 33689387 33691037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00940 1 223 NAC Transcription Factor Family AT4G28500 71.064 8.84e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst11g00940 NAM 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00940 - - gmx:100797459 573.163