Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00938 ATGGCTACCAACAGATTCTTGTGTGAAACTTGTGGGAAGGGTTTCCAGAGGGATCAAAATCTTCAACTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGAGTTGCGTCCACCACGACCCTTTAAGGGCTCTTGGAGACTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAAAAGTGGAAGTGCGAGAAGTGCTCAAAGCGATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCATTGGCAGAAGAATCAGCTAGGGTAAATGCATCATCAGACATGAACACTTCTTTAGGGGGTAACATTGGTTACAACGTAATGGGAACATCCCTAGGCCCTAACATGGCAACCCATTTTTCCTCAATTTTCAAGCCAGTTTCAAACACAGAAGAAACAAGCAATCAAACATCGAGGGGACTACCCCTTTGGATGGGCCAAACATCTTCTCAAGCTCAAGAAACAATGGTCAACAACAATTTGCGTGAGATTCATCAACTTGGGTCTGCCACAAGCTCAGCAACAGCATTTGGTGGCAACTCACTAGTCCAATGCTCAAACTTTCCTCCTTCAAACTATCAACTAAGTTGGGTGTTTGGAACTAAACTTTCTAATAACAGTAACATCCAAGAGCTAACAACCGACACCACTACATCACTTCCCCTAGGCAATTCGAGTGTTCCGTCTTTGTATAGTTCCCAACACCAACCCCACCCCCACCAAACTTGTTCATCAGCAAACATGTCAGCCACAGCTTTGCTGCAAAAAGCTGCTCAAATTGGATCAAGCTCAAGTGACCCTTCATGGCTTGGGAGCTTAGGTTTGAAATGTAATAGCACTACTCAAGGTCAAGATGAAAATAACAGCAACAAGTTTAGTGGCTTGTACGGTTCAAGTTTAGTTCTCAGCACTCTTGGGACTGAACCAGATAACTCTGCATGTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTCAGTGAAGAAGGTGGAGGGGGGCAGTTTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCACACTTTATCAATCAACGAGTGGATTTGATTTGA 1236 0.449 MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARVNASSDMNTSLGGNIGYNVMGTSLGPNMATHFSSIFKPVSNTEETSNQTSRGLPLWMGQTSSQAQETMVNNNLREIHQLGSATSSATAFGGNSLVQCSNFPPSNYQLSWVFGTKLSNNSNIQELTTDTTTSLPLGNSSVPSLYSSQHQPHPHQTCSSANMSATALLQKAAQIGSSSSDPSWLGSLGLKCNSTTQGQDENNSNKFSGLYGSSLVLSTLGTEPDNSACDLSQMHPPKRRHVLSEEGGGGQFRDFLGVGVQNHLPHFINQRVDLI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00938 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Spst11g00938 411 Gene3D Classic Zinc Finger 39 130 - -
Spst11g00938 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Spst11g00938 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 395 IPR031140 -
Spst11g00938 411 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Spst11g00938 411 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Spst11g00938 411 Gene3D Classic Zinc Finger 2 29 - -
Spst11g00938 411 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00938 Spst-Chr11 33665747 33667791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00938 1 397 IDZ Gene Family AT5G44160 50.461 2.26e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g00938 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00938 K25870 - gmx:100790620 720.694