Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00928 ATGTCCCTCAAATGTGCAATTGACTTGGACATTCCTGACATCATACACAAGTATGGTCAACCCATGCCACTCTCACAACTCACTGCTTCACTACCAATCCACCCTTCCAAAGCCAACTGCATCTTCCGCTTGATGCGAATTTTGACCCATTCTGGCTTCTTCTCTCAACAAAAGCTCAACGAGAATGAGCTTGAAATGGGTTATGTGTTGACTGATGCATCCACTCTACTACTTAAGGACAACCCCTTGAGTATGATACCGTTCTTGCATGCCATGCTTGATCCAATTTTGACAAAGCCATGGCATCACTTGCCTACATGGTTCAAGAATGATGATCCTACGCCATTCCACACAGCACATGAGATGAAAATTTGGGACTTGGCTGGTCGTGATCCAAAACTTAATCTCCTTTTCAATGATGCCATGGCGAGTGACGCTCAACTGGTTGCCAATGTGGTGATTGAGAGGTGTGAGGGAGTGTTCAATGGCTTGGAGTCACTTGTTGACGTTGGGGGAGGCACAGGTACCATGGCAAAGGCAATTGCCAAATCATTCCCTCACTTAGATTGTACGGTATATGATCTCCCACATGTTGTTTCCGGTTTACAAGAAGCTGATAACTTAAAATATGTTGGAGGTGACATGTTTGAGTCCATTCCTCCTGCAGATGCCGTGCTGTTGAAGTGGATATTACATGACTGGAATGATGAGCAGTGTGTGAGAATACTGAAGAACTGCAAGAAGGGACTAAAGAGGAAGGTGATTGTGATCGACATGGTGGTGGACATTGAAAAGGGAGATGATGAATCAATTGAAACATAG 822 0.4453 MSLKCAIDLDIPDIIHKYGQPMPLSQLTASLPIHPSKANCIFRLMRILTHSGFFSQQKLNENELEMGYVLTDASTLLLKDNPLSMIPFLHAMLDPILTKPWHHLPTWFKNDDPTPFHTAHEMKIWDLAGRDPKLNLLFNDAMASDAQLVANVVIERCEGVFNGLESLVDVGGGTGTMAKAIAKSFPHLDCTVYDLPHVVSGLQEADNLKYVGGDMFESIPPADAVLLKWILHDWNDEQCVRILKNCKKGLKRKVIVIDMVVDIEKGDDESIET 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00928 273 Gene3D Vaccinia Virus protein VP39 78 273 IPR029063 -
Spst11g00928 273 Gene3D - 1 77 IPR036388 -
Spst11g00928 273 Pfam O-methyltransferase domain 101 266 IPR001077 GO:0008171
Spst11g00928 273 FunFam O-methyltransferase ZRP4 79 273 - -
Spst11g00928 273 PANTHER O-METHYLTRANSFERASE 1 269 IPR016461 GO:0008168
Spst11g00928 273 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 273 IPR016461 GO:0008168
Spst11g00928 273 SUPERFAMILY "Winged helix" DNA-binding domain 1 82 IPR036390 -
Spst11g00928 273 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Spst11g00928 273 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 269 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00928 Spst-Chr11 33491309 33496749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00928 1 261 Monolignol Biosynthesis Gene Families AT5G54160 36.330 5.77e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00928 - K16040 gmx:100794122 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00928 11 33491309 33496749 Spst11g00928 11 33491309 33496749 ECH