Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00923 ATGTCCGTTAAGTGTGCAATTGACTTGAACATACCAGATATCATACACAACTATGGCAAACCTATGCCACTCTCAAAACTCACTGCTTCCCTGAAAATCCACCCTTCCAAGACTTGTTTTATTTACCGCTTGATGAGAATTTTGACTCATTCTGCTTTTTTCTATGAGCACGATGTCACCGAAAATGAGCTCGAAGTGAGGTATGTTCTAACTGATGCATCTAAACTACTCCTAAAGGACCCTCCCTTTAGTTTGAAATATTTTCCGCAACTCGTACATGATCCAGTAATTGTCAATTCATGGATTCAACTCTCTACATGGTTCACAAATGATGACCCTACACCATTTCATACTGCAAATGGTATGGGATTTTGGGATTTTGCTGCGCGTGAGCCTAAATTGAATCACCTCTTCAATGAGGCCATGGCTACTGACAGTCTATTGGTTTCCAGTATGGTGGTTGAGAAGTGTAAGAGTGTGTTTGAGGGATTAGAATCATTGGTTGATGTGGGAGGAGGAACAGGGACTATGACTAAGGTCATTGCTGAGTCATTCCCACAACTAAAGTGCATTGTATTTGATCTGCCACATGTTGTTGGTGACTTGCAAGGAACTGAGAACTTAAAATATGTTGGAGGGGATATGTTTGAAGCAATTCCTCCTGCTGATTCCATTATGTTGAAGTGGGTATTGCATGACTGGAACGACGAAGAATGTTTGAAAATACTGAGTAATTGCAAGGAGGCAATAAGTAGCAAGGGCAAGGTTATCATCATTGACATGGTGATGGGGAATAAGAAGGAAGACCGTGAATTAACTGAGACGGAGATTTTCTTTGATATGCAGATGATGCACGATGTCACCGAAAATGAGCTTGAAGTGAGGTATGTTCTAATTGATGCATCTAAATTACTCCTTAAGGACCATCCCTTTAGTTTGAAATATTTGCCGCAATTCGCACTTCATCCAGGGATATTGGATTTTGCTGCGCGTGAGCCTAAATTCAATCACCTCTTCAATGACGCCATGGCTACTGACAGTCTATTGGTTTCCAGTATGGTGATTGAGAAGTGTAAGAGAGTGTTCGAGGGATTTGAATTACTGGTTGATGTTGGAGGAGGAACAGGGACTATGGTTAAGGTCATTTCTGAGTCATTCCCAGAACTAAAGTAA 1173 0.4109 MSVKCAIDLNIPDIIHNYGKPMPLSKLTASLKIHPSKTCFIYRLMRILTHSAFFYEHDVTENELEVRYVLTDASKLLLKDPPFSLKYFPQLVHDPVIVNSWIQLSTWFTNDDPTPFHTANGMGFWDFAAREPKLNHLFNEAMATDSLLVSSMVVEKCKSVFEGLESLVDVGGGTGTMTKVIAESFPQLKCIVFDLPHVVGDLQGTENLKYVGGDMFEAIPPADSIMLKWVLHDWNDEECLKILSNCKEAISSKGKVIIIDMVMGNKKEDRELTETEIFFDMQMMHDVTENELEVRYVLIDASKLLLKDHPFSLKYLPQFALHPGILDFAAREPKFNHLFNDAMATDSLLVSSMVIEKCKRVFEGFELLVDVGGGTGTMVKVISESFPELK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00923 390 SUPERFAMILY "Winged helix" DNA-binding domain 1 81 IPR036390 -
Spst11g00923 390 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 330 IPR016461 GO:0008168
Spst11g00923 390 PANTHER O-METHYLTRANSFERASE 295 390 IPR016461 GO:0008168
Spst11g00923 390 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 320 389 IPR029063 -
Spst11g00923 390 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Spst11g00923 390 Gene3D Vaccinia Virus protein VP39 79 296 IPR029063 -
Spst11g00923 390 Gene3D Vaccinia Virus protein VP39 306 390 IPR029063 -
Spst11g00923 390 CDD AdoMet_MTases 167 263 - -
Spst11g00923 390 FunFam O-methyltransferase ZRP4 79 303 - -
Spst11g00923 390 Gene3D - 1 77 IPR036388 -
Spst11g00923 390 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 286 IPR029063 -
Spst11g00923 390 Pfam O-methyltransferase domain 325 390 IPR001077 GO:0008171
Spst11g00923 390 Pfam O-methyltransferase domain 101 286 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00923 Spst-Chr11 33297945 33302725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00923 326 390 Monolignol Biosynthesis Gene Families AT5G54160 38.462 2.10e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00923 - K16040 gmx:100793263 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00923 11 33297945 33302725 Spst11g00923 11 33297945 33302725 ECH