Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00907 ATGCAAAGAAATAACAATGGAATGCATCCAGCCTGTGCAGCATGTAAGCATCAAAGGAAGAAATGCAGTGAAAATTGTGTATTGGCACCTTACTTTCCATCAAGCAGAAGCCGTGAGTTCCATGCTGTGCACAAGGTTTTTGGTGTTAGCAACATAACAAAGTTGGTAAAGAATGCTAGAGAGGAAGATAGAAGAAGAGTTGTGGATTCATTGACATGGGAAGCATGCTGCAGACAAAGGGACCCTATACATGGCCCTTATGGAGAGTACACAAAAGTTTACAACGAGTACAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAACACCAAATGTTGCAGTTTCCCTCTCTAGGGTTAAAGTCTGTGCAAGATTTGATTCCCTGCAAAGGGGAAGACAAAGTAGAAGTTGATAACGCATTGGATTATCTTCATAGGAAAAAGAATGGTATTCTTGATTCTGATATTTATAATACTTATTGTTCCAATTATTTGCAAGAGTTTCAGAATCTGAGGCCAGAAGTTATCATACCCTTTCAGCAGCAATCTCAACCTTACTACATTACAGTGACGTGA 579 0.3955 MQRNNNGMHPACAACKHQRKKCSENCVLAPYFPSSRSREFHAVHKVFGVSNITKLVKNAREEDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKRFRSQHQMLQFPSLGLKSVQDLIPCKGEDKVEVDNALDYLHRKKNGILDSDIYNTYCSNYLQEFQNLRPEVIIPFQQQSQPYYITVT 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00907 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 113 - -
Spst11g00907 192 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Spst11g00907 192 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00907 Spst-Chr11 32986427 32987110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00907 9 109 AS2 family AT1G06280 56.436 1.89e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst11g00907 LOB 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00907 - - vra:106780610 333.183