Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00901 ATGGATATCTTCGACGATGATCACGACCACCACATCCCATATGTTCCAACCCGCGACGAATCAAACAACAGCAACGTCAAAATATTGTTCATATCCATGGTTTCCTTCATAGTTGTCTTGTTCCTCGTCTTCTCCCTCTATGTCTACGCACGCTGCCTCCTAAAGCGCCGATCTCGCCACCGCGCCGCCGTTCACCGACTCACCCTAGCAGCCCTTCATGTCTCTGACGTCGACTCTGCACGTAGCAGGGTCGAACCATCAAACACAGGACTCGATCCTGCAATAATAGCCTCGCTGCCAACCTTTCCCGTCAAAGCAAAGGTTCTGAAAGATAGTGGTGGCGGTAATGATAATCTTGATGCTTCATTGATAAGGGAGTGTGTTGTGTGCTTAAATGCCCTAGAAGGTGAAGAAAAAGTCAAGTTACTACCAAACTGTAAACACTTTTTTCATATAAGTTGTATCGACACATGGCTTGGTTCTCACTCCACGTGTCCTCTCTGTCGAGCAGAGGTTAAACCTCGACTCGAACCACATGATCGTGAAGGTCCTGCTTCTCTTGCTCTTGATGATGCACCTCTTATATTTGATGGTGCTGATAGTAACAGTAACAATAATGATAATGGTGAGTCTTTGAAAAATAGTGGTTCTAATTCACGGTTGAGTTCGTTTAAAAGGATGCTTAGTAGGGAAAGATCTTCCAGAAGAGTCCAACCACATGGCCACGATGATGCAGACGGTGGTGTTGATCATGATTTGGAGAGGCAATGA 771 0.4578 MDIFDDDHDHHIPYVPTRDESNNSNVKILFISMVSFIVVLFLVFSLYVYARCLLKRRSRHRAAVHRLTLAALHVSDVDSARSRVEPSNTGLDPAIIASLPTFPVKAKVLKDSGGGNDNLDASLIRECVVCLNALEGEEKVKLLPNCKHFFHISCIDTWLGSHSTCPLCRAEVKPRLEPHDREGPASLALDDAPLIFDGADSNSNNNDNGESLKNSGSNSRLSSFKRMLSRERSSRRVQPHGHDDADGGVDHDLERQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00901 256 CDD RING-H2_EL5-like 126 169 - -
Spst11g00901 256 PANTHER RING-H2 FINGER PROTEIN ATL16 10 174 IPR044600 GO:0016567|GO:0016740
Spst11g00901 256 Pfam Ring finger domain 126 169 IPR001841 -
Spst11g00901 256 SUPERFAMILY RING/U-box 126 175 - -
Spst11g00901 256 MobiDBLite consensus disorder prediction 198 256 - -
Spst11g00901 256 MobiDBLite consensus disorder prediction 198 224 - -
Spst11g00901 256 MobiDBLite consensus disorder prediction 225 256 - -
Spst11g00901 256 SMART ring_2 127 168 IPR001841 -
Spst11g00901 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 175 IPR013083 -
Spst11g00901 256 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00901 Spst-Chr11 32946766 32947536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00901 4 256 C3H Transcription Factor Family AT2G42360 39.147 8.28e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00901 K19038 - gmx:100783358 305.064