Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00888 ATGGAAATGGAGGATTTTTTATGGGGTAGTGACATTGATGGGGATGTCCCTAAGGGGAATAGTGATGGTTTTGAAGAAAGTAATGGTGTGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAACTTGTAGAGGCTCCTGCTAAATTGGAAAGGAAAGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAACCATAGTGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACATGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGCGTTGAAGAACAAGAGGGTGGGTTAAACGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCTGGCCTGTTGTCTGATATAAGACAAGAACTAGATTCTCTTCATCTTAAGATAACAAAGGCAGATATTGCAACCTTAGAAGGCAGGATGAAGAATGTCTTGGTGCTCATTAGCTGCAAAGAACAGAACTTTGAAGATGCTTCATACCGACAGTTTCTGGCTGGTTCTGTTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTCTCACAGGACATTTTAGGAACCAGGAAAAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTCTTGTAA 777 0.4093 MEMEDFLWGSDIDGDVPKGNSDGFEESNGVIGSGCGSSFSLVLDRERGELVEAPAKLERKGVSTERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKRNAAHACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQELDSLHLKITKADIATLEGRMKNVLVLISCKEQNFEDASYRQFLAGSVHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00888 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Spst11g00888 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Spst11g00888 258 PANTHER TRANSCRIPTION FACTOR BHLH30 40 250 IPR045847 GO:0003700|GO:0006355
Spst11g00888 258 SMART finulus 75 124 IPR011598 GO:0046983
Spst11g00888 258 CDD ACT_UUR-ACR-like 157 192 - -
Spst11g00888 258 Gene3D - 64 126 IPR036638 GO:0046983
Spst11g00888 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00888 Spst-Chr11 32858872 32860107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00888 56 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.816 2.86e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g00888 HLH 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00888 - - gmx:100788819 428.328