Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00827 ATGGAGGAACTCAAAAAAAAAGAAAAGTGTTTTGCATGGTCCATTGAAGAGGAAGGTGAAATCATGAGCGGCCACAGGCACAATTCCACACCTTTCCCAAGGCAGAGAAGTTTTAGATCCTATGATGGCCACAATTACAATCATAGTGAACCCAATGAAGTGCCTGTGTTTTACAGATCTAACACTACTCATGCCACCGATGACAGAAGTTCAGATGTATTATTACCTCGGGATTGGGAATTCAGACATCCTGTAGGATTCCACCACATACCAAATTTCCCAGCACCACCACCTAGAAGACAACAAATTTATGCTCAGAATGAGGATATGGGAAGGCACAGAGATATTTTCCTGCAGCCACCTTCAAGATCCACATTCCAAACAATCACACAAGCTCCCCCAGTGGTAGAAATTTCCAAATCAACAGCTTTGAGCAAGCTTAGGAAAGTATTGTATGACCATCACCCTCCCCCAAAGAGGCATGCTATGAATCTGTGCTTATATTACAGAAATGCTAAAGAAAAACCTTTAAAAGAGAAGGAAATGGAAAAGGATGAAGATGGTAAGAGGTGTGCCGTTTGCTTGGAAGATTTTAATAGTGGTGAAGAGGTGATGCTCACTCGATGCAACCACATGTTTCATGAGGATTGCATAGTGCCATGGCTAACGACGAAGGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATACGAAGTGGGAACCCTTCATCCTTCAACAACATTGACTTGGCCACCTTCGAATCTAGCAACCTCATCAATGAAGAGCTTTTCTCAGTTTTGAGGACCTTGGAAGAAGTTTCTCAATTCCGCAGTCTTACTTAA 846 0.4255 MEELKKKEKCFAWSIEEEGEIMSGHRHNSTPFPRQRSFRSYDGHNYNHSEPNEVPVFYRSNTTHATDDRSSDVLLPRDWEFRHPVGFHHIPNFPAPPPRRQQIYAQNEDMGRHRDIFLQPPSRSTFQTITQAPPVVEISKSTALSKLRKVLYDHHPPPKRHAMNLCLYYRNAKEKPLKEKEMEKDEDGKRCAVCLEDFNSGEEVMLTRCNHMFHEDCIVPWLTTKGQCPVCRFVICEIRSGNPSSFNNIDLATFESSNLINEELFSVLRTLEEVSQFRSLT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00827 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 245 IPR013083 -
Spst11g00827 281 Pfam Ring finger domain 190 232 IPR001841 -
Spst11g00827 281 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 77 233 - -
Spst11g00827 281 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Spst11g00827 281 SMART ring_2 191 231 IPR001841 -
Spst11g00827 281 SUPERFAMILY RING/U-box 180 242 - -
Spst11g00827 281 FunFam RING/U-box superfamily protein 175 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00827 Spst-Chr11 32433555 32435083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00827 154 277 C3H Transcription Factor Family AT3G58720 47.328 4.97e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00827 - - vun:114168869 382.489