Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00778 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTAATTGACGATATTCCCGTCCCCGATGCCTCCTTCACCGTCCCTTCCTCCGCCTTCACATGGCCCCCTAACGCCTTGAACGCCACTTCCAATGTCGGTGTTGAAGTTGATGGCTCATTGGGGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAAAGGGTTAGATCTGAGACATGTGCTGCTTCTAGCTCCAAGGCGTGTCGGGAAAAGTTGCGAAGAGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACAAAAACGGATAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACACTAATAAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAGCTTCGAGATGAGAAACAGATGCTCAAGGCAGAGAAGGAGAAGTTGGAGCTGCAGCTGAAATCGTTGAATGCACAGCCCAGTTTCATGCCTCCCCCTGCTGCAATCCCTGCTGCCTTTGCAGCGCAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 711 0.4923 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSAFTWPPNALNATSNVGVEVDGSLGDSDGLKESGSKKRVRSETCAASSSKACREKLRRDRLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDTNKGLQEKIKELKAEKNELRDEKQMLKAEKEKLELQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00778 236 SMART finulus 81 132 IPR011598 GO:0046983
Spst11g00778 236 FunFam Transcription factor bHLH34 66 124 - -
Spst11g00778 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Spst11g00778 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Spst11g00778 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Spst11g00778 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Spst11g00778 236 CDD bHLH_AtILR3_like 80 155 - -
Spst11g00778 236 Coils Coil 123 178 - -
Spst11g00778 236 Gene3D - 78 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00778 Spst-Chr11 31518819 31522591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00778 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.293 2.14e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g00778 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00778 - - gmx:100788858 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00778 11 31518819 31522591 Spst11g00778 11 31518819 31522591 ECH
Spst5g00993 5 9610213 9612025 Spst11g00778 11 31518819 31522591 PCT