LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g00765	ATGGCTTCTTCATCTCAGCTCATCAAGACTTATGATGTCTTTGTGAGCTTCTGTGGTGAAGACACGCGCAACAGCTTTACTGGTTTTCTCTTTCAAGCTCTCTGCAGAAAAGGCATCCATGCCTTCAAAGATGATGATGATCTCAAGAAAGGCGAATCCATTGCCCCTGAGTTGCTACAAGCCATTCAAGGGTCTCGCCTTTTCCTCACTGTCTTCTCAAAAAACTATGCTTCCTCTACTTGGTGCTTGCGTGAACTAGCAGAGATCTGTAACTGCGTTGAAACATCGCCAAGACGTGTTGTACCTGTATTTTATGATGTTGATCCTTCAGAGGTGCGAAAACAGAGTGGGTGTTATGAGAGAGCATTTGCAGAACACGAAGAAAGATTCAGAGAAGATAAAGAAAAGATGGAGGAAGTGCAGAGATGGAGAGAAGCTCTCACTCATGTGGCCAATCTCTCTGGTTGGGATATAAGAAACAAGCAACAATATGCAGAAATTGAACAAATTGTTCAAAACATAATAAATATACTGCGTCCCAACTTATTAAGTCTTCCAAATCATAATCTAGTTGGGATAGAGTCTCGGATTGAAGAATTAGCAAATGTTCTATGTTTGGAGTCAGTTGATGATGTTCGAGTTGTTGGAATTAGTGGGATGGGTGGCATAGGAAAAACAACTCTTGCTCGCGCTTTATATGAAAGATTCTCTCGTCAATATGATTTTCATGGTTTTATTGATGATGTAAGCAAAATTTATCGGGATTCAAGTTCATTAGGTGTACAAAAGCAGTTGCTTTCCCAGTCTCTAAAGGAGAAAAATGTAGAGATTTGCAATGCTTTGGAGGGAACAAGTTTGGTGTGGAGTAGGCTACACAGTACAAAGACATTTGTTGTTCTTGACAATGTTGATGATGTTGAACAACTGAGAATGTTTACAGGGAATAGATACACTTTGTTGCGTGAATGTTTGGGTGGAGGGAGCAGAATCATCGTAATTTCCAGGGATGAGCATGTATTGAGGACACATGGAGTGGATGATGTTTATCAAGTCCGCCCTTTGACTGAAAAAAATGCTGTCGAGTTGTTTTGTAGACATGCTTTCAAAGTTAATTATATTTTGAGCGAATATGAAAAGTTGGCAAGTGAATTTCTATCACATGCTCAAGGCCATCCCTTGGCAATCAAAGTAATTGGGTCATCTTTGTTTGGTCGAAACGTATCACAATGGAATGGTGCATTGGATAGGCTCAAAGAGAATAAAAGTAGAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAACTGGATGAAGGAGACAAAGAAATATTTTTGGATATTGCTTGCTTCTTCTACAGTGGTTATGAAGAAGAATATGTGAATGAAGTTGTTGAGAGATTTAGGCAAGTGTATTGTACGAGAAAATCACCTAAGGAGCCTATAAAGTGGAGTAGGTTGTGGGATTTCCAAGATCTCCACAATGCCTTATTAGACAATCAGGCAGCTGAAAACCTTGAAGCTATCGTTGTTTCAGGCGATGAGTTCAATAAGCCTATTAAAACGACAATGATGGCAGATGGTCTATCAAAAATTAAGCACCTTAAGTTGCTTCAACTTCAGTACTTGAACCTCTCCGGAAGTCTCAGTCATCTTTCGAATGAAGTAGGGTATCTTACATGGAAAGCATTTCCTTTTGAGTGTTTGCCTCAAAGTTTTCAACCAGATAAACTGATTGAGTTAAACCTTAGTGAGAGCAACATTCAACGACTATGGACAGGCAGAAAGCCTCTACACAATTTGAAACGTTTGGATCTCTCTTTCTCAAAAAATCTTGTTGAGATGCCAGATCTTGGAGACGCCCTAAATCTCGAATGGCTAGATCTTGAAGGATGCATACAGCTCAAAAAAATCAGTCCATCCATTGGCCTTCTGAGAAAGCTTGCTGTTTTGAATTTGAAAAACTGCATAAACCTAGTAAGCTTACCCAAGAACCTATTGGGCCTGACTTCTCTTGAATATCTCAGTGTCTCTGGGTGTTCAAAACTGTATAATAATCAGTTATTAGATGAAGGATGTAATGGAGAGCATTCGAAGAAGCTTTGTTTAGTTGAAGATGCTTTCCATTCCGAGACAAAATCCTCTTTTATTAAAAAAATGATTTCGTGGCCTTTGGATTTGTTGTATTCCAGAGCACAGAGAGAGTCAGTTAGCTGTTTAACACCTTCCTCTCCTACTCTGCCTTGTTTGCGTGAACTTCATCTAAGTTTCAGTAATTTAGTTCATATCCCTGATGCCATTGGAAAGTTACATTGCTTAGAAAAGCTAAATTTAAAGGGAAACAATTTTGTTACGCTTCCCAGCCTCAAAGACCTTTTCAGACTCTATAATTTAAACATACAGCATTGCAAGCGGTTAAAATATTTTCCTGATCTCCCTTCACGAACTGACTTGCCATCAAACCGTTACTTTCTGTTCTTGCCATATTCACCAACTACCAATTCACGTCCAGCTGAACACGACGAAGTTGTTGGAGGATTAAACATTTTCAACTGTCCAGAATTAGTTGATAGGGAACGGTGCACTAGCATGGGTGTTTCATGGATGATACAAATTGTTCAGGCGAACCACCAATGCAGATGTCTTTCATTTAGTCCATTCGGTCCAAATCTTGAGAGTATTATCCCTGGAAATGAAATACCGAGGTGGTTTAACAATGAGCATGTGAGCATTGACAATTCAATAATCATCGATGCATCTTCTGTAGCGCAGGACAATTATTGGATTGGAGTTGTGTGTTGTGTTATATTCCAGATACGGAAAATGACTTCTCCAACAACAGCACCACTTTCCGGTGATAAAATTCCTGTGGATGTCAGAAAAGATCTAGTGATGGACGAATCAGATCACATGTGGTTATTCTATTTCAGTCGGCAAGAGTTCATTAATGAATGCAACGCTAGGAACATACATGGTGGCTTGAAATTGAAAATTGAAATAAGGGGCTTGGAAGATTTTCGTGATTCATTGGTAAATTTGGTGAACAAGGAAGAGAAAGTTTATCCGGTGAAGGAATTCTGGCAAACGGATAAAAAAAAATTTCGAGGTGAAGTGAAGAAATATGGATACAGTTGGGTATCTGAACAAGATCTAGAACTATCCAATGCGACAATGATGTATGGTGGAAATTTGACTACTCGTAAGCGCAAGTTTTTGGCTATGGAAGAAAACAAGTAG	3234	0.3905	MASSSQLIKTYDVFVSFCGEDTRNSFTGFLFQALCRKGIHAFKDDDDLKKGESIAPELLQAIQGSRLFLTVFSKNYASSTWCLRELAEICNCVETSPRRVVPVFYDVDPSEVRKQSGCYERAFAEHEERFREDKEKMEEVQRWREALTHVANLSGWDIRNKQQYAEIEQIVQNIINILRPNLLSLPNHNLVGIESRIEELANVLCLESVDDVRVVGISGMGGIGKTTLARALYERFSRQYDFHGFIDDVSKIYRDSSSLGVQKQLLSQSLKEKNVEICNALEGTSLVWSRLHSTKTFVVLDNVDDVEQLRMFTGNRYTLLRECLGGGSRIIVISRDEHVLRTHGVDDVYQVRPLTEKNAVELFCRHAFKVNYILSEYEKLASEFLSHAQGHPLAIKVIGSSLFGRNVSQWNGALDRLKENKSRNIMDVLRISFDQLDEGDKEIFLDIACFFYSGYEEEYVNEVVERFRQVYCTRKSPKEPIKWSRLWDFQDLHNALLDNQAAENLEAIVVSGDEFNKPIKTTMMADGLSKIKHLKLLQLQYLNLSGSLSHLSNEVGYLTWKAFPFECLPQSFQPDKLIELNLSESNIQRLWTGRKPLHNLKRLDLSFSKNLVEMPDLGDALNLEWLDLEGCIQLKKISPSIGLLRKLAVLNLKNCINLVSLPKNLLGLTSLEYLSVSGCSKLYNNQLLDEGCNGEHSKKLCLVEDAFHSETKSSFIKKMISWPLDLLYSRAQRESVSCLTPSSPTLPCLRELHLSFSNLVHIPDAIGKLHCLEKLNLKGNNFVTLPSLKDLFRLYNLNIQHCKRLKYFPDLPSRTDLPSNRYFLFLPYSPTTNSRPAEHDEVVGGLNIFNCPELVDRERCTSMGVSWMIQIVQANHQCRCLSFSPFGPNLESIIPGNEIPRWFNNEHVSIDNSIIIDASSVAQDNYWIGVVCCVIFQIRKMTSPTTAPLSGDKIPVDVRKDLVMDESDHMWLFYFSRQEFINECNARNIHGGLKLKIEIRGLEDFRDSLVNLVNKEEKVYPVKEFWQTDKKKFRGEVKKYGYSWVSEQDLELSNATMMYGGNLTTRKRKFLAMEENK	1077

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g00765	1077	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	684	IPR044974	GO:0006952
	Spst11g00765	1077	Gene3D	-	8	179	IPR035897	-
	Spst11g00765	1077	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	156	IPR035897	-
	Spst11g00765	1077	Gene3D	-	180	346	IPR027417	-
	Spst11g00765	1077	PRINTS	Disease resistance protein signature	388	402	-	-
	Spst11g00765	1077	PRINTS	Disease resistance protein signature	214	229	-	-
	Spst11g00765	1077	PRINTS	Disease resistance protein signature	595	611	-	-
	Spst11g00765	1077	PRINTS	Disease resistance protein signature	290	304	-	-
	Spst11g00765	1077	Gene3D	Ribonuclease Inhibitor	500	699	IPR032675	-
	Spst11g00765	1077	Gene3D	Ribonuclease Inhibitor	708	855	IPR032675	-
	Spst11g00765	1077	ProSiteProfiles	TIR domain profile.	9	178	IPR000157	GO:0007165
	Spst11g00765	1077	Pfam	NB-ARC domain	194	423	IPR002182	GO:0043531
	Spst11g00765	1077	SMART	till_3	10	153	IPR000157	GO:0007165
	Spst11g00765	1077	SUPERFAMILY	L domain-like	522	833	-	-
	Spst11g00765	1077	FunFam	Disease resistance protein (TIR-NBS-LRR class)	8	179	-	-
	Spst11g00765	1077	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	447	IPR027417	-
	Spst11g00765	1077	ProSiteProfiles	Leucine-rich repeat profile.	771	792	IPR001611	GO:0005515
	Spst11g00765	1077	Gene3D	-	353	437	IPR042197	-
	Spst11g00765	1077	Pfam	TIR domain	11	177	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst11g00765	Spst-Chr11	31390967	31401793	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst11g00765	9	845	WRKY Transcription Factor Family	AT4G12020	28.027	1.87e-72	262

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g00765	-		-	pvu:PHAVU_010G055200g	1173.3