LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g00756	ATGGCTTCTTCATCTCGGCTCATCAACACATATGATGTCTTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTTACTGGTTTTCTCTTTCAAGCTCTCTGCAGAAAAGGCATCCATGCCTTCAAAGATGATGAAGATCTGAAAAAAGGCGAATCCATAGCACCTGAGTTGCTACAAGCCATTCAAGGGTCTCGCCTTTTCCTCACTGTCTTCTCAAAAAACTATGCTTCCTCTATTTGGTGCTTGCGTGAACTAGCAGAGATCTGTAACTGCGTTGAAACATCGCCAAGACGTGTTATACCTATATTTTATGATGTTGATCCTTCAGATGTACGAAAACAGAGTGGCTTTTATGAGAAAGCATTTGCACGACACGAAGAAAGATTCAGACAAGATAAAGAGAAGACGGAGGAAGTGCAGAGATGGAGACAAGCTCTCACACAAGTGGCCAATCTCTCTGGCTGGGATATACGAAACAAGGCACAATTTGCAGAAATCGAACAAATTGTTCAAAACTTACTAATTATACTGGGTCCGAACACATTAAATCTTCCCAATGATGATCTAGTTGGGATGGAGTCCCGTGTTGAAGAATTAGAAAATCTTCTATGTTTGGGATTAGTTAATGAGGTTCGAGCTGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATATGAAAGAATCTCTCATCAATATGATTTTCATGGTTTTATTGATGATGTAAGCAAAATTTATCGAGATTCAAGTTCATTAGGTATACAGAAGCAGTTGCTTTCCCAGTCTCTAAAGGAGAAAAATCTAGAGATTTGCAATGCTTTGGAGGGAACATGTTTGGTGTGGACTAGGCTACACAATGTAAAGGCACTTGTTGTTCTTGACAATGTTGAGGATGTTGAACAACTGAAGATGTTTACAGGGAATAGAAACACTATGTTGCGTGAATGTTTGGGTGGAGGGAGCAGAATCATCATAATTTCTAGGGATGAGCATGTATTGAGAACACATGGAGTGGATGATGTTTATCAAGTTCAGCCGTTGAATAAGGAGAATGCTGTCGAGTTGTTTTGTAGAAGTGCTTTCAAAGTTAATTATATTTTGAGCGAATATGAAAAGTTGGCATATGAAGTTCTATCACATGCTGAAGGCCATCCCTTGGCAATTGAAGTAATTGGGTCATCTTTGTTTGGTCGAAATGTATCACAATGGAGAAGTGCATTGGGTAGGTTAAAAGATAATAAAAGGAGAAATATTATGGATGTTTTGCGTGTAAGTTTTAATCAGCTAGATGAAATTGACAGAGAAATATTTTTGGATATTGCATGCTTCCTCAGTGATTATGATGAGAAATATGCTATAGAAGTTCTAAATTTTCGTGAATTTTATCCTGAATATGGCATACAAGTTCTCATTGATAAGTCACTCATAACCATTAAATATGGGAGCATTTGTATGCATAGATTGTTGAGGGATTTGGGCAGGTGTATTGTTCGTGAAAAATCACCTAAGGAGCCCATCAAGTGGAGCAGGTTGTGGGATTACCAAGATCTCTATAATGTCATGTTAGAGAATCAGGAAAGTGAGAATCTTGAAGCCATAGTTGTTAAATCCAATTCATTGATGATTAATGAAGCTATAATGAGGGCAGATGCTCTGTCAAAAATTAAGCACCTTAAGTTGCTTAAACTTGAGAACGTAAAGTTTTCGGGAAGTCTAAATAATCTTTCAAATGAACTTGGATATCTTACATGGAAGCAATATCCTTTTCAGTGTTTGCCTCCAAGTTTTCAACCAGATAAATTAGTTGAGTTAGTCATTGGTGGGAACAACATTCAACGACTATGGGAAGGCACAAAGCCTCTACACAATTTGAAACGTTTGGATCTCTCTCACTCCAAAAATCTAGTTGAGATGCCAGATGTTGAAAGTGCCGTAAATCTTGAGATGCTAGATCTTGAAGGATGTATACAGCTCAGAATAATCAACCCATCCATTGGTCTTCTGAGAAAGCTTACTTTTCTCAATTTGAAAAACTGCATAAACCTACATTGCAAGCGGTTGAAATATTTGCCGGATCTACCTTCACGAACTGACTTGCCCTCAGAACTTTACTATCTGCCAGATCTACCTTTCAATTTAATACGTGATGAAGCTAATGCAGGAATAATGATTTACAACTGTCGAGAATTAGTTGATAGGGACCGGTGCACTAGCATGAGTATTTCATGGATGATACAAATTGCTCAGGCGAACCACCAATGTAGATGTTTTCCATTTGATAAAATGAGTCCAAATTTTGAAAGTATTATCCCTGGAAGTGAAATACCGAGGTGGTTTAACAGTGAGCATGTGAGCACCGACAATTCAATAATCATAGATGCATCTCCAGTCGCGCATGAAAATTATTGGATGGGAGTTGTGTGTTGTGTAATATTCCAGATACGGGAAATTACTTCTCCAAGAGAAATATTACTTTACAGTGATGTAATTCCTGTTGATGTCAGGAAAGATCTAGCGATGGACGATTCAGATCACATGTGGCTATTCTATCTAACTCAGCAAGAGTTCATTCATCAATGCAATTATCGTGGCATACCTAATATTGATTGCTTGAAAATAAAATTTAAAATAGGGGACATGCTATATTTTCGTGATTTAATGGTGGAAAGTGAAGAAATGGAAGATAAAGTTTATCCCGAGAAGGAACAGTGGCAAATGGACGAGAGTGTTGTTCTGCTTGAAGTGAAGAAATACGGGTATCGTTGGGTATCTGAACAAGATCTAGAACAATCAAATTCGATAATGATGCATGGTGGAAATTTGGTAACTCGTAAGCGCAAGTTTTTAGCGATAGATGGAAACAAGTAG	2889	0.3821	MASSSRLINTYDVFVSFRGEDTRNNFTGFLFQALCRKGIHAFKDDEDLKKGESIAPELLQAIQGSRLFLTVFSKNYASSIWCLRELAEICNCVETSPRRVIPIFYDVDPSDVRKQSGFYEKAFARHEERFRQDKEKTEEVQRWRQALTQVANLSGWDIRNKAQFAEIEQIVQNLLIILGPNTLNLPNDDLVGMESRVEELENLLCLGLVNEVRAVGISGMGGIGKTTLARALYERISHQYDFHGFIDDVSKIYRDSSSLGIQKQLLSQSLKEKNLEICNALEGTCLVWTRLHNVKALVVLDNVEDVEQLKMFTGNRNTMLRECLGGGSRIIIISRDEHVLRTHGVDDVYQVQPLNKENAVELFCRSAFKVNYILSEYEKLAYEVLSHAEGHPLAIEVIGSSLFGRNVSQWRSALGRLKDNKRRNIMDVLRVSFNQLDEIDREIFLDIACFLSDYDEKYAIEVLNFREFYPEYGIQVLIDKSLITIKYGSICMHRLLRDLGRCIVREKSPKEPIKWSRLWDYQDLYNVMLENQESENLEAIVVKSNSLMINEAIMRADALSKIKHLKLLKLENVKFSGSLNNLSNELGYLTWKQYPFQCLPPSFQPDKLVELVIGGNNIQRLWEGTKPLHNLKRLDLSHSKNLVEMPDVESAVNLEMLDLEGCIQLRIINPSIGLLRKLTFLNLKNCINLHCKRLKYLPDLPSRTDLPSELYYLPDLPFNLIRDEANAGIMIYNCRELVDRDRCTSMSISWMIQIAQANHQCRCFPFDKMSPNFESIIPGSEIPRWFNSEHVSTDNSIIIDASPVAHENYWMGVVCCVIFQIREITSPREILLYSDVIPVDVRKDLAMDDSDHMWLFYLTQQEFIHQCNYRGIPNIDCLKIKFKIGDMLYFRDLMVESEEMEDKVYPEKEQWQMDESVVLLEVKKYGYRWVSEQDLEQSNSIMMHGGNLVTRKRKFLAIDGNK	962

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g00756	962	SMART	till_3	10	153	IPR000157	GO:0007165
	Spst11g00756	962	Gene3D	Ribonuclease Inhibitor	522	710	IPR032675	-
	Spst11g00756	962	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	156	IPR035897	-
	Spst11g00756	962	Gene3D	-	353	437	IPR042197	-
	Spst11g00756	962	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	447	IPR027417	-
	Spst11g00756	962	ProSiteProfiles	TIR domain profile.	9	178	IPR000157	GO:0007165
	Spst11g00756	962	Pfam	C-JID domain	777	934	IPR045344	-
	Spst11g00756	962	PRINTS	Disease resistance protein signature	290	304	-	-
	Spst11g00756	962	PRINTS	Disease resistance protein signature	214	229	-	-
	Spst11g00756	962	PRINTS	Disease resistance protein signature	626	642	-	-
	Spst11g00756	962	PRINTS	Disease resistance protein signature	388	402	-	-
	Spst11g00756	962	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	737	IPR044974	GO:0006952
	Spst11g00756	962	SUPERFAMILY	L domain-like	556	701	-	-
	Spst11g00756	962	Gene3D	-	181	346	IPR027417	-
	Spst11g00756	962	SUPERFAMILY	"Winged helix" DNA-binding domain	424	527	IPR036390	-
	Spst11g00756	962	FunFam	Disease resistance protein (TIR-NBS-LRR class)	8	178	-	-
	Spst11g00756	962	Pfam	NB-ARC domain	197	429	IPR002182	GO:0043531
	Spst11g00756	962	Gene3D	-	8	179	IPR035897	-
	Spst11g00756	962	Pfam	TIR domain	11	174	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst11g00756	Spst-Chr11	31039612	31043789	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst11g00756	11	708	WRKY Transcription Factor Family	AT4G12020	29.888	1.69e-76	273

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g00756	-		-	vra:106780741	974.156