Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00754 ATGGCTTCTCAAGCAATTATCGAATGCACCTCTTATTCATCTGAGGTGATAAAGACGTATGATATCTTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTCATTGGTTTTCTCTTTCAAGCTCTTCGATCGAAAGGGATTGATGCCTTCAAAGATGATGAAGATCTGAAGAAAGGCGAATCCATAGCACCAGAGCTCCTACAAGCCATTCAAGGGTCTCGCATTTTCATTGCGGTCTTCTCAAAAAACTATGCTTTCTCTACTTGGTGCTTGCGTGAACTAGCAGAGATATGTAAATGCGTAAAAACATCACGAAGATCTGTGGTGCCGATATTTTACGATGTTGATCCTTCAGAAGTGCGAAAACAGAGTGGATGTTATAAAAAAGCATTTGCAGAACACGAAGAAAGATTCAAAGAAGATAAAGAGAAGATGGAGGAAGTGCAGAGGTGGAGAGAAGCTCTCACTCATGTGGGCAATCTCTCTGGTTGGGATATCCGAAACAATCTCCCAAATGATGATCTAGTTGGAATAGAGTCTCGGGTTGAAGAATTAGCAAATCTTCTTTGTTTGGAGTCAATGAATGAGGTTCGAGTTGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGCTCGGGCTTTACATGAAAGAATCTCTCATCAATATGATATTCATTGTATTATTGATGATGTAAGCAAAATTTATCGAGATTCTAGTTCAGTAGGTGTACAAAAGCAGTTACTGTCCCAGACTCTAAAGGAGAAAAATCTAGAGATTTGCAATGCTTTTGAGGGAACATGTTTGGCGTGGACTAGGCTACGCAATGCAAGGGCACTTATTGTTTTGGACAATGTTGATGAAGTTGAACAACTAAGGATGTTTACAGGGAATAGAAACACTATGTTGCGTGAACTCTTAGGTGGAGGGAGCAGAATCATCATAATTTCCAGGGATGAACATGTATTGAGAACACATGGAGTGGATGATGTTTATAAAGTCCAGCCGTTGAACGAGGAAAATGCTGTACAGTTGTTTTGTAGGAATGCTTTCAAAGTCAATTTTATTTTGAGCGAATATGAAAAGTTGGCACGTGATGTATTATCACATGCTCAAGGACATCCCTTGGCAATTGAAGTAATTGGCTCATCTCTATATGGTCGAAATGCATCACAATGGAAAAGTGCATTGGGTAGGCTAAAAGATAATAAAAGTGGAAATATTATGAATGTTTTGCGTTTAAGTTTTGATCAGCTGGATGTAGGAGACAGAGAAATATTTCTGGATATTGCATGCTTCCTCAACGGTTATCATGAAAAATTTGTGAAGGAAGTTCTAAATTTCCGTGGATTTCAACCTGAATATGGCGTACAACTTCTCCTTGATAAATCACTCATAAATATTGAATATGAGAATATTGAAATGCATAGCTTGTTGAGGGATTTAGGCAGGTGTATTGTTCGTGAAAAATCACCTAAGGAGCCAATAAAGTGGAGTAGGTTGTGGGATAACCAAGATCTCCGCAATGCCTTGTTAGACAATCAGGTGAAATTAATAGTTTAA 1572 0.3899 MASQAIIECTSYSSEVIKTYDIFVSFRGEDTRNNFIGFLFQALRSKGIDAFKDDEDLKKGESIAPELLQAIQGSRIFIAVFSKNYAFSTWCLRELAEICKCVKTSRRSVVPIFYDVDPSEVRKQSGCYKKAFAEHEERFKEDKEKMEEVQRWREALTHVGNLSGWDIRNNLPNDDLVGIESRVEELANLLCLESMNEVRVVGISGMGGIGKTTLARALHERISHQYDIHCIIDDVSKIYRDSSSVGVQKQLLSQTLKEKNLEICNAFEGTCLAWTRLRNARALIVLDNVDEVEQLRMFTGNRNTMLRELLGGGSRIIIISRDEHVLRTHGVDDVYKVQPLNEENAVQLFCRNAFKVNFILSEYEKLARDVLSHAQGHPLAIEVIGSSLYGRNASQWKSALGRLKDNKSGNIMNVLRLSFDQLDVGDREIFLDIACFLNGYHEKFVKEVLNFRGFQPEYGVQLLLDKSLINIEYENIEMHSLLRDLGRCIVREKSPKEPIKWSRLWDNQDLRNALLDNQVKLIV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00754 523 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 509 IPR044974 GO:0006952
Spst11g00754 523 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 190 - -
Spst11g00754 523 SUPERFAMILY "Winged helix" DNA-binding domain 410 512 IPR036390 -
Spst11g00754 523 Gene3D - 2 159 IPR035897 -
Spst11g00754 523 SMART till_3 19 162 IPR000157 GO:0007165
Spst11g00754 523 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 165 IPR035897 -
Spst11g00754 523 PRINTS Disease resistance protein signature 200 215 - -
Spst11g00754 523 PRINTS Disease resistance protein signature 276 290 - -
Spst11g00754 523 PRINTS Disease resistance protein signature 374 388 - -
Spst11g00754 523 Gene3D - 168 333 IPR027417 -
Spst11g00754 523 Pfam TIR domain 20 165 IPR000157 GO:0007165
Spst11g00754 523 Pfam NB-ARC domain 180 409 IPR002182 GO:0043531
Spst11g00754 523 ProSiteProfiles TIR domain profile. 18 190 IPR000157 GO:0007165
Spst11g00754 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 433 IPR027417 -
Spst11g00754 523 Gene3D - 339 423 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00754 Spst-Chr11 30988252 30990122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00754 177 518 WRKY Transcription Factor Family AT5G45050 33.819 3.92e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00754 - - vra:106780741 748.429