Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00727 ATGGCGACCAGGGCAGCAGTGGCGGCGCCACGCTTTTTGCGACGTTTTTTCTGCACAAACCCCGCCTCTTCTTCTTTTCCCTTCGTTTCTACGCCGTCTACGGGCGACGTCCCCACCCCCGCCCGACCGACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGATGGATCGATTGACAGATATGAAACGTTTTTGGTCAAGAAACAAGGGCTTAGCAAAAGGACAACTACAGAAAAGCTTCGGGAAGAATTTTCAAAGTTTGGGGAAGTTGTTCATGCGAGGGTGGTAACTGATCGAGTCTCAGGTTATTCTAAGGGATTTGGTTTTGTGCAATATTCTACAATAGAAGAGGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGATATTTCGTGGCTATTCATGTGATGCTGACTGGTATTTCCCCAATGCAATGCAGTTTTTGGACGGTTGGGTCATATTTGCCGAATATGCGAGACCTAGACCACCACCAGGACAATACAACAACAGCCCTCAGTTTGGCCGGCATATTATTTACAAGGGTATGGATGCTCAGGTTGGTTACTCCATAGTCGCTTCATTTTTGTACCAGAGTATTGATGCAGATGTCTGTACTCTATGA 621 0.4767 MATRAAVAAPRFLRRFFCTNPASSSFPFVSTPSTGDVPTPARPTAEPNTNLFVSDGSIDRYETFLVKKQGLSKRTTTEKLREEFSKFGEVVHARVVTDRVSGYSKGFGFVQYSTIEEAAKGIEGMDGKIFRGYSCDADWYFPNAMQFLDGWVIFAEYARPRPPPGQYNNSPQFGRHIIYKGMDAQVGYSIVASFLYQSIDADVCTL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00727 206 SMART rrm1_1 63 138 IPR000504 GO:0003723
Spst11g00727 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 160 IPR000504 GO:0003723
Spst11g00727 206 PANTHER NUCLEOLAR PROTEIN 8 32 167 - -
Spst11g00727 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 133 IPR000504 GO:0003723
Spst11g00727 206 SUPERFAMILY RNA-binding domain, RBD 70 145 IPR035979 GO:0003676
Spst11g00727 206 Gene3D - 29 166 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00727 Spst-Chr11 30441780 30444420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00727 69 146 Eukaryotic Initiation Factors Gene Family AT1G49760 32.051 1.13e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00727 - - gmx:100789351 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00727 11 30441780 30444420 Spst11g00727 11 30441780 30444420 ECH