Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00709 ATGTCAGATGATCAGTTTCAAGCGAGTGGAAACTGGTGGGAATCAGCAAGAAACGTCAGGTTTGAGAGTGGGGAAACGCAGTCTTCTTCTTCTGGTCTCACCAACATAGGAAACTATGCTTGGCAGCATGACATGGCAAGGTCTTCTTCCATGGATAACTCTGCCTCAGGTGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAACTTCAAGTTCACCCACATCATGACTCATCGGCCACAAATTCCACCAATGACCACCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCCCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTGCGAGGTGAAAAGGGTTCGGAGAGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAGGCACCACTTTTCAGCAAGAAAGTGGGAGTAACAATATTGCGTTGTCTCATCATCAACAAGTTCATTGGAGGCCAGAAAAGTTGTTCTCTGTGGAGTCGTCAAGCAATGAATTCAAGAGAGGTTTCTCCTTGGACCAGACACAGTTCAGTCCTCAATATAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTATGTTGGCAACCCTTCTTCAATATTACAAGGACTTTTGGGACAAGAGAGCAATAACCAACAACCCCACCAAGGTGGTAGTGATTCGTTTGAGAATCGTCCCATGAATTTTCCTTACTCAGCAACAAGCTATGGGTTAAGCTCAAACATGGAGTTGGTGCCTTCTTGGTCAAAAGTTCCTCAGTTCTTGAGAGCTTCACCACCAAAGCAACCACCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAGTTCTGAGCCTGCTATAAAGGATGCTCGATCCAGCTTCATCCCCTCTTTGCAATCCCCCTTCTCCCCATCCAATTTCGATGTTCAATCGAAGAATATATCTGAAGTTAGGGACTCGGGTGTGGTGAAGAAAAGTGGGAGTGAAACAGCACCAAAAAGGCCCAGGAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCATCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTCACCGTTTTAAGCACCCCTTATATGAAAAGTGGTGTTCCCACACAGCATCAGCAGAGTTCTGGTAAATCGAAGGAATCTGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCTGTGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTACAGATAG 1401 0.4604 MSDDQFQASGNWWESARNVRFESGETQSSSSGLTNIGNYAWQHDMARSSSMDNSASGGSSVVFHDQKQLQVHPHHDSSATNSTNDHPNLHMMGLGLSSQAMDWNQASLQLRGEKGSESSFRSMLQENLSSSGTTFQQESGSNNIALSHHQQVHWRPEKLFSVESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDYVGNPSSILQGLLGQESNNQQPHQGGSDSFENRPMNFPYSATSYGLSSNMELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNASSEPAIKDARSSFIPSLQSPFSPSNFDVQSKNISEVRDSGVVKKSGSETAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGVPTQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00709 466 CDD bHLH_AtbHLH_like 352 403 IPR045239 -
Spst11g00709 466 MobiDBLite consensus disorder prediction 327 353 - -
Spst11g00709 466 SMART finulus 357 401 IPR011598 GO:0046983
Spst11g00709 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Spst11g00709 466 MobiDBLite consensus disorder prediction 408 434 - -
Spst11g00709 466 FunFam Transcription factor bHLH123 family 356 418 - -
Spst11g00709 466 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 133 447 - -
Spst11g00709 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 409 IPR036638 GO:0046983
Spst11g00709 466 Gene3D - 356 415 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00709 Spst-Chr11 30186739 30189970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00709 111 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.680 2.24e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00709 - - gmx:100818424 773.081