Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00662 ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCCAAACACAAAAAGATATTGGAAGGACTTCTTAAACTACCAGAGAATAAGGAATGCGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCCAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCAGCAACTTTGGACACCTGGCTTCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAACTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGAAATGAGAAACCTAAATCACCATCTAGTTTTCGAGAAGAGAAAAGTCCTCCACATTGCCAAAGACCTGCGGAAAGAGTCGGCCATAGTTATGCAGCTGTCTCCGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTTGTGTTCCTGCCCCTCCCAAAGGGCCTGAGCTGGTAACTCCTGTGGCAAGACCACATGTTGAGAAAGCGGAACCTGTTGGACCAACACCACGAGCTGAAACTTCAAAACAGACTACTGTCACAACACAAAACTCCCCTCCAAAAGTTGACTTTTCTACGGATCTTTTTGACATGTTATCTATGGATGGTCCAAATGAAAAGGGTTCAGGTGCAACTGATTCTAGTGCTGATGATAGTAACTGGGCAGGTTTTCAGTCTGCTCCAGAGGCATCGACAGCTGAGAAGACTGATACCACAAAATCAGTTGACAGTATACCTCAGTCCGCATCTGGAATTGAAGATTTATTTAAAGACTCACCTTCAGTTGCACCAAGTTTAACTCCAGAAAAACCACAAAAAGATGTTAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATACGGTGTCTCCATTTGTTATGCATCAACAGCAGCTGGCCATGCTGGCACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTAAATCTGCTGGTGTGGATTCCAAGTACTTGGCTAGCTTACAGCAACAGCAGTCTCTTCTAATGGCTGCTGCTGCTAAATCTGCTGCTGGGGATTCCAAGTACCCCGGCAGCATACAACAACCTGGGTCCAATATTCCTGTCCAAAGTTGGTCTGGGGCTGGCTATCCAATCCCAGGTACAATGCCCATGGGTGGTCAGGAAGACTTGCAGAAACTAATGCAGACAATGAACGTGACTGCAGCGCATTCAGCAGGGAATCCAGTTCAGTATCCACCATCTAGTTACTATGCTATGGGGCAAGTTGCCCCAGTTAATGGTACGTCAACAACGGCAGGAGCAAGCAAACCTCAGTCGGCATCTCCGGTACCATCGACCACTTCAAAGGCAGGGAGCGATTATGATTTCTCCTCTTTAACACAGGGAATGTTCGCTAAACACTGA 1503 0.4531 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKSPPHCQRPAERVGHSYAAVSENTFEERKKIQPSNAIPATRICVPAPPKGPELVTPVARPHVEKAEPVGPTPRAETSKQTTVTTQNSPPKVDFSTDLFDMLSMDGPNEKGSGATDSSADDSNWAGFQSAPEASTAEKTDTTKSVDSIPQSASGIEDLFKDSPSVAPSLTPEKPQKDVKNDIMSLFEKGNTVSPFVMHQQQLAMLAQQQSLLMAAAAKSAGVDSKYLASLQQQQSLLMAAAAKSAAGDSKYPGSIQQPGSNIPVQSWSGAGYPIPGTMPMGGQEDLQKLMQTMNVTAAHSAGNPVQYPPSSYYAMGQVAPVNGTSTTAGASKPQSASPVPSTTSKAGSDYDFSSLTQGMFAKH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00662 500 CDD ArfGap 19 117 - -
Spst11g00662 500 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Spst11g00662 500 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Spst11g00662 500 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Spst11g00662 500 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Spst11g00662 500 MobiDBLite consensus disorder prediction 125 146 - -
Spst11g00662 500 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Spst11g00662 500 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 369 IPR044520 GO:0005096
Spst11g00662 500 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Spst11g00662 500 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Spst11g00662 500 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Spst11g00662 500 MobiDBLite consensus disorder prediction 200 312 - -
Spst11g00662 500 MobiDBLite consensus disorder prediction 125 149 - -
Spst11g00662 500 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Spst11g00662 500 MobiDBLite consensus disorder prediction 211 230 - -
Spst11g00662 500 MobiDBLite consensus disorder prediction 461 489 - -
Spst11g00662 500 MobiDBLite consensus disorder prediction 247 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00662 Spst-Chr11 28804649 28815708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00662 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 2.66e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00662 K12486 - gmx:100807561 808.905