Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00643 ATGGACAGCACAGAAGACTCATCCACGAGTTCACAACAGCAACCGAACCTTCCACCCGGGTTTCGGTTCCACCCCACAGATGAAGAGCTCGTGGTTCACTACCTCAAGAAGAAAATTGATTCTGTTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTCGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGGGAGGAAGAGTGGTACTTTTTCAGTCCAAGAGACAGGAAGTACCCAAATGGTGCGAGGCCAAACAGGGCTGCAACTTCAGGGTACTGGAAGGCCACAGGGACAGATAAGCCAATATGCAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAACCACCAAAAGGAGTCAAAACCGATTGGATCATGCATGAGTATCGTCTTGCTGAAACCAAGCCTAACAACAGGCCTCCTGGGTGTGACTTGGGTCACAAGAAAAACTCCTTAAGGCTGGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGCAACACACAAAGGTCACCTATGGACCATGAGAGGGATGATTCCATGGATGACATGATTGGAGAAGTACCTCCTTCCATCAACGTGGGCCACATGAATGCGAGATTTCACCTTTCAAAGATGTCCACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGCAATGGTGTGAATGGGATCAGCACTACAACAAGTGCCCTACCATCTCAGTTTGGCACCTCGAATTCCAAGGCAGATCACCTTCCTTTTGCCCTTTCAAACAACACTTCAGCCTCCAAAAGAACACTCTCATCACTGTATAACTGGAATGATGATAGTGATGAAAAACACTTCAATTTGGATAGTAACGGGAATGTGAGTGTTGTGAGGACTGACGAGAACAACGGTACTCCTGGCTCCTTTGCTACTCTGCTTAACCAGCTCCCACAAACAACTTCATTGCCCCAACTAGGGTCTATGGGAGACGGGTTACTTAGAACACAGTATCAAATACAAGGGACTAATTGGTATGGTTAA 1071 0.4659 MDSTEDSSTSSQQQPNLPPGFRFHPTDEELVVHYLKKKIDSVPLPVSIIADVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRLAETKPNNRPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSPMDHERDDSMDDMIGEVPPSINVGHMNARFHLSKMSTSYSGALLENDRNTLEGVVIGNGVNGISTTTSALPSQFGTSNSKADHLPFALSNNTSASKRTLSSLYNWNDDSDEKHFNLDSNGNVSVVRTDENNGTPGSFATLLNQLPQTTSLPQLGSMGDGLLRTQYQIQGTNWYG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00643 356 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Spst11g00643 356 MobiDBLite consensus disorder prediction 1 22 - -
Spst11g00643 356 PANTHER NAC TRANSCRIPTION FACTOR 56 17 220 - -
Spst11g00643 356 FunFam NAC transcription factor 56 26 181 - -
Spst11g00643 356 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Spst11g00643 356 Gene3D NAC domain 26 180 IPR036093 GO:0003677|GO:0006355
Spst11g00643 356 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Spst11g00643 356 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00643 Spst-Chr11 28577116 28578925 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00643 1 355 NAC Transcription Factor Family AT3G15510 52.674 4.50e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst11g00643 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00643 - - gmx:100811670 612.453