Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00640 ATGGGAGTTCCAGAGAGAGACCCTCTTGCACAATTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTTTGTCGTAAGGTTGCTGGGCACCATTTTTCTCTTCCAATCATTGCTGAAATTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGGTAAGGCTGTGTTTGGAGAAAAAGAATGGTACTTTTTCAGCCCGAGGGATAGGAAGTACCCGAATGGTTCACGACCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACGGGAACTGACAAGGTTATCACCACCGAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGAAAAGCACCCAAAGGCTCCAAAACCAATTGGATCATGCATGAGTACCGTCTTCTTGACTCTTCGCGCAGAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCAAGCTCGCAGAAAGTTGAGCCAAATTTTTGGGCCAAAGAATGCAGCAATGGGTCATCACCATCTTCATCTTCCCACGTGGAAGACATGCTCGAATCATTTCCGGAGATCAATGATCAGTGCTTTACCTTGCCGAGTGTGAACTCGCTCAAAACAATGCAACAACAGGACGAGAATTTCGGGTCTCAGAACATGGGATCCGGGTTTTTCTCTGATTGGGTTACCCCGCCGGATCTTGATGCCATTTCTGAATTCGGGTCAGCTTGCCAAACCCAAGGGATGGTGAATTACGAGTTCAATGACTTATTTGTCCCTTCCGTTCCGCCATTTGGCCACATGGAGTTCATGGCAGGGGCACCGACCGAGGAAGAGGTGCAAAGCAGTGTGAGAACCCAACGGGTGGATGGAGCGGGGTGTTTTCAGCAGAACCCGAATGCTAGAAATTTATCAACTTCAATCGACCCATTTGGGTTTGGGTTCATGGACCAGCAAATTGGATTCGGGTTACGAAATTAG 1011 0.4688 MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLLDSSRRNNLGTTKLDDWVLCRIYKKNSSSQKVEPNFWAKECSNGSSPSSSSHVEDMLESFPEINDQCFTLPSVNSLKTMQQQDENFGSQNMGSGFFSDWVTPPDLDAISEFGSACQTQGMVNYEFNDLFVPSVPPFGHMEFMAGAPTEEEVQSSVRTQRVDGAGCFQQNPNARNLSTSIDPFGFGFMDQQIGFGLRN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00640 336 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Spst11g00640 336 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Spst11g00640 336 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Spst11g00640 336 FunFam NAC domain-containing protein 72-like 23 169 - -
Spst11g00640 336 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Spst11g00640 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00640 Spst-Chr11 28563332 28564719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00640 1 268 NAC Transcription Factor Family AT4G27410 62.976 1.82e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst11g00640 NAM 2.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00640 - - gmx:100811301 596.275