Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00627 ATGGGGCCTCTTGTGATTTCTTCAAGTTTTCTTTGGTTTCTGTGCTTTGTTCTCAGTGCACACGTAGAAGCTAATAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAATCCCACCACCCTTGGAGGAGCTTGTGGCTACGATGACACATTTCATGCTGGGTTTGGTGTGAACACTGCCGCAGTGAGCACCATGCTATTCAGAGATGGTGAGGTTTGTGGAGCATGCTACCAAGTAATGTGTGACTTTAGGGCAGACTCCAAATGGTGCCTTATCAGCCGCAGTGTAACGGTAACCGCCACAAACTTTTGCCCTCCGAACAACCACGGAGGGTGGTGTGACCCCCCTTACCACCACTTCGACATGTCCATGCCAGCTTTCATTCGCATTGCACGACAGGGCAATGAAGGCATTGTGCCTGTTCTTTATAGAAGGGTGGCGTGCAAGAGAAGAGGGGGAGTGAGGTTCACACTGAAGGGGCAATCCAATTTCAACATGGTGATGATATCCAATGTTGGTGGGAGTGGGGGTGTGAAAGCTGTGTGGATCAGAGGATCCAGAAGTGGAGCATGGTTGGCAATGCACAGGAACTGGGGAGCCAACTGGCAGAGCAGTGCAGATCTCAGAAACCAGAGACTCTCATTCAAGATCACATTGGTTGATGGCATGACTCTGGTCTTCCTCAATGTGGTGCCTTCCACTTGGAGAGTCAAATTTGATCTGCGTTTGGCAATGTCGTGGAAGCAGTTATTCTCTGCGTCTCGGAACTTCGCCGCCACTTTTGTGCGTCAATGCTCTTCCACGGCCACCACAAACCGTAGAAACCTCTATTCCCGAATCAGTCCCCTCGGTGACCCTTCCCTCAGCGTAGTCCCCGTTCTAGACCAGTGGATCCAGGAAGGAAACGCCGTTAACGCCCCCCTCCTCCAACGCATCATCAAAGTCCTCCGTTCTCGCAAGCGCTTCACCCAAGCACTTCAGGTTTCTGAATGGATGAGTAGCAAAGGGATTTGCCTAATTTCCCCGGGTGACCAAGCGGTGCAGCTAGATCTCATTGGTAGGGTTCATGGAGTGGAGACTGCAGAGAGATATTTTCAGAGTTTGAGTGATGGAGACAAAAATTGGAAGCTTCACGGTGCTCTTTTGAACTGTTATGTGAGACAGGGATTGGTTGAAAAGTCACTCTCCCAGATGCAGAAGATGAAGGACATGGGTTTTGTTTCGTTTCTCAATTACAACAACATAATGTGCCTCTACATGCAAACCGAACAACTTGAGAGAGTCCCTGATGTTTTGGCTCAGATGAAGGAGGATGGTGTTCCTCCAAACATTTTCAGCTACAGGATTTGCATGAACTCTTATGGCGCGAGAGGTGACCTCGCGAATGTGGAGAAACTGTTGGAGGAGTTGGAGAGGGAACCCCACGTTGGCACAGATTGGATGACATATGTTATGGTGGCCAGGTTCTACATAAAAGCAGACATGAAGGAAAAGGCATTGATGTACCTGAAGAAGTGTGAGGAAAAGGCAGACAAGCGAGACGCGCTTGCCTACAACCATCTGATTTCACACTATGCAAGTCTTGGAAGCAAGAGTGCCGTAATGAGGATTTGGAGGCTGCAGAAAGCCAACTGCAAGAAGCAGTTTAACAATGAGTATATAACCATGTTGGGATGTTTGGTGAAGATGGGGGAGCTTGATCAAGCTGAAGAAGTACTCCATGAGTGGGAGTTATCTGGTAACACTTATGATTTCAGAGTACCTAACATCCTTCTGATTGGGTATTCCCAAAGGGGATTGGTGGAGAAAGCAGAAGCACTGCTCCGGAATATGGTTGCGAAAGGGAAGACGCCGACTCCGAACAGTTGGAGCATCATTTCATCTGCGTATGTGGCTAAGGAGAACATGGAGAAGGCATTTCAGTGCATGAAGGAGGCTGTGGCTGTGCAAGCACAGAATAAACGTTGGAGACCAAATGCTGATGTTATTTCCAGCATATTGAGTTGGGTCAATATTAACAAAGATAAAGGGGAAGTGGAAGATTTCGTCAATTCATTGAAGACTGTCCTTGATCAAGATGGTAGATGTGGGAAGGATGTAGATGGGCATTTAGAAAGTATGAAAGTTAATAATATTGAGATGGAAGAAGAGATAAAGGAAACTCCTTAA 2181 0.4755 MGPLVISSSFLWFLCFVLSAHVEANNGWLNAHATFYGANQNPTTLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVMCDFRADSKWCLISRSVTVTATNFCPPNNHGGWCDPPYHHFDMSMPAFIRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGGVKAVWIRGSRSGAWLAMHRNWGANWQSSADLRNQRLSFKITLVDGMTLVFLNVVPSTWRVKFDLRLAMSWKQLFSASRNFAATFVRQCSSTATTNRRNLYSRISPLGDPSLSVVPVLDQWIQEGNAVNAPLLQRIIKVLRSRKRFTQALQVSEWMSSKGICLISPGDQAVQLDLIGRVHGVETAERYFQSLSDGDKNWKLHGALLNCYVRQGLVEKSLSQMQKMKDMGFVSFLNYNNIMCLYMQTEQLERVPDVLAQMKEDGVPPNIFSYRICMNSYGARGDLANVEKLLEELEREPHVGTDWMTYVMVARFYIKADMKEKALMYLKKCEEKADKRDALAYNHLISHYASLGSKSAVMRIWRLQKANCKKQFNNEYITMLGCLVKMGELDQAEEVLHEWELSGNTYDFRVPNILLIGYSQRGLVEKAEALLRNMVAKGKTPTPNSWSIISSAYVAKENMEKAFQCMKEAVAVQAQNKRWRPNADVISSILSWVNINKDKGEVEDFVNSLKTVLDQDGRCGKDVDGHLESMKVNNIEMEEEIKETP 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00627 726 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 240 IPR007117 -
Spst11g00627 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Spst11g00627 726 Gene3D - 157 247 IPR036749 -
Spst11g00627 726 Gene3D - 16 153 IPR036908 -
Spst11g00627 726 SUPERFAMILY TPR-like 490 660 IPR011990 GO:0005515
Spst11g00627 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Spst11g00627 726 SUPERFAMILY Barwin-like endoglucanases 14 175 IPR036908 -
Spst11g00627 726 Gene3D Tetratricopeptide repeat domain 492 722 IPR011990 GO:0005515
Spst11g00627 726 Pfam PPR repeat family 416 458 IPR002885 -
Spst11g00627 726 Gene3D Tetratricopeptide repeat domain 312 483 IPR011990 GO:0005515
Spst11g00627 726 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 157 IPR007112 -
Spst11g00627 726 NCBIfam pentatricopeptide repeat 593 623 IPR002885 -
Spst11g00627 726 NCBIfam pentatricopeptide repeat 416 448 IPR002885 -
Spst11g00627 726 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Spst11g00627 726 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Spst11g00627 726 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Spst11g00627 726 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Spst11g00627 726 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Spst11g00627 726 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Spst11g00627 726 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Spst11g00627 726 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Spst11g00627 726 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Spst11g00627 726 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Spst11g00627 726 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Spst11g00627 726 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Spst11g00627 726 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Spst11g00627 726 SMART dpbb_1 63 147 IPR007112 -
Spst11g00627 726 Pfam PPR repeat 384 410 IPR002885 -
Spst11g00627 726 Pfam PPR repeat 557 584 IPR002885 -
Spst11g00627 726 Pfam PPR repeat 593 619 IPR002885 -
Spst11g00627 726 Pfam Lytic transglycolase 63 147 IPR009009 -
Spst11g00627 726 PANTHER OS12G0527900 PROTEIN 269 694 - -
Spst11g00627 726 CDD DPBB_EXPA_N 27 152 - -
Spst11g00627 726 Pfam Expansin C-terminal domain 158 236 IPR007117 -
Spst11g00627 726 SUPERFAMILY PHL pollen allergen 154 241 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00627 Spst-Chr11 28421034 28428101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00627 25 239 Expansin Gene Family AT3G15370 62.449 5.79e-106 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00627 - - gmx:100804385 717.227