Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00609 ATGAGTCTTCCACAAACTGCTCCTGCTGCAACTAGTCCTCCCCCACATCTGTATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTTATATTCTCAATTCCTATACTCTTCTCCATCATTCTGTTTCTCTTGTTTTACTTGTTTTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCATCCTCTCCTCACTTGCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCCCTATCATTCATCACCTTGTCGTTTGGATCTGACCCTCCAATTCCTAGATAAGCTTCCAAGGATTTTATGTGATGAGGATTTGCTAGCAAGAGATTCACTGTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTGGATTGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCATCAACCCAGAACCGCCTATTAATATTATATCAGACCCACACCAGCATGGTGCTATCGTTTCAGACTCTCCATTGCACACTCCATCATTGCTACCTCACCCACGAGATCATCATCAACTTGGTGCTTCCTCAAATGCTGCTAATCAGTTTGCTAGCTAG 648 0.4506 MSLPQTAPAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRTIANPPTTTPYHSSPCRLDLTLQFLDKLPRILCDEDLLARDSLCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTKFINPEPPINIISDPHQHGAIVSDSPLHTPSLLPHPRDHHQLGASSNAANQFAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00609 215 Pfam Ring finger domain 112 154 IPR001841 -
Spst11g00609 215 SMART ring_2 112 153 IPR001841 -
Spst11g00609 215 CDD RING-H2_EL5-like 112 154 - -
Spst11g00609 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 185 - -
Spst11g00609 215 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 81 159 - -
Spst11g00609 215 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Spst11g00609 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 159 IPR013083 -
Spst11g00609 215 SUPERFAMILY RING/U-box 90 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00609 Spst-Chr11 28253514 28255226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00609 2 212 C3H Transcription Factor Family AT4G10150 32.127 8.58e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00609 K19039 - gmx:100794298 314.694