Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00600 ATGGTGTTGCAAAGATGTTGCCCTATGGCTTTTGTGCAATGGAGTTTCTTGACATGCTTTATTTGCTTTTCTGCGGGACTTGAGACCCTAGCCAGATCCTGTGACAAGCATGATTTGTTGGCCCTGAAGGAATTTGCAGGCAACCTTTCAATAGGGTCTATCATCACAGCATGGTCAGATGATGTTGTTTGCTGCAAATGGGTTGGAGTTGTTTGTAATGATGTGGTTGATGGAGAAGCTGCTAGTAGAGTGTCCAAGTTGATTCTGCCTGGAATGGGTCTTAACGGCACGATTTCAAGTTCTTTAGCTTATCTTGATGAGCTGAAAGTGCTTAATATTTCGTTCAATGGTCTCCAAGGTGGATTGCCTTCCGAGTTCTCTAATTTGAAGCAGTTAGAAGTTCTTGACTTGAGCCATAATATGTTGTCTGGAGCAGTTGGTGGGCCACTCTCTGGTTTGCAATCCATTCAGATACTGAATATTTCTAGCAATTTATTTGTCGGAGACCTCTTTGAAATTGGGGGCTTAGAACATCTCCTTGCTCTCAGCATAAGCAATAATTCATTCACTGGCCAGTTCAATTCTCAAATTTGCAGCTCCTCCAAGGGTATTCACATTCTTGATATATCAAAAAATCATTTTTCTGGTGGTCTTGAATGGTTGGGAGACTGTAGCACATCTCTCCAAGAGTTACATTTAGATTCCAATTTATTTACTGGCTATCTTCCTGATTCCTTGTATTCAATGTCAGCCTTGGAGCAGCTGTCAGTCTCTGTGAACAATCTGTCTGGTCAGTTGAGCATGGAGCTAAGTAACCTCTCAAACCTAAAATCTCTAATCATTTCTGGAAATCGGTTCTCGGGGGATCTCCCTAATATTTTTGGGAATCTTTTGGACCTTGAACAACTAGTAGGACACTCCAATTCATTTTCTGGATCATTGCCTTCCACCTTGTCCTTATGCTCAAAACTTCAAGTGCTTGATCTTCGAAATAATTCTTTCACAGGTTCTGTTAGCCTTAATTTCACTGGGTTGTCTAATCTTTCCACGTTGGACCTTGGTAGCAATCATTTTAATGGGTCCCTTCCAAATTCTTTGTCCAATTGCCATGAATTGACAATGTTAAGCCTTGCAAAAAATGAATTTACTGGCCAAATCCCTGGGAGTTATGCAAACCTCTCTTCACTTTTGACTCTGTCTCTGTCAAACAATAGCTTTGAGAACTTATTCGGGGCGCTTTATGTCCTGCAGCAGTGCAAAAATATCAGCACTCTTATCCTTACAAAGAATTTCCATGGTGAGGAAATTCCAGAAAATTTAACAGTAAGCTTCAAGAGCCTTGTGGTTTTAGCACTTGGAAATTGTGGTCTCAAAGGTCGTATCCCTGCTTGGCTATTGAATTGCTCGAAATTGGAAGTTCTTGATTTGTCATGGAACCATTTGGAAGGTAGTATCCCTTCTTGGATTGGTTGGATGGACCATTTGTTCTACTTGGATTTGTCAAATAATTCTCTTATGGGAGAATTTCCAAGAAGTTTGACAGAGCTTAAGTGCCTCATATCCTTAAATTATCAATTATCAAGTCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGATAATGGACTGCAATATAACCATGCTTCGAGTTTCCCTCCATCAATATACTTGAGCAATAACAGATTAAATGGAACAATATTGCCTGAAATTGGTCGTTTGAAAGAACTTCATATCTTGGATTTAAGCAGGAACAACCTCACTGGCACCATTCCGAGCTCTATTTCTGAGATGAAGAATTTGGAAACATTAGATTTATCTAATAATAATCTCTTTGGAACTATTCCTTCATCATTTAACAGCCTCACATTCTTGTCTAAGTTCAGTGTGGCATATAATCACTTATGGGGAACAATTCCATCTGGGGGGCAATTTTCAAGTTTCCCTAATTCAAGTTTTGAGGGAAACCTGGGGCTTTGTGGGGAGACATATCATCATTGTAACAACGAAAAAAAAGCCAACATGTCTTCTCATTCCGGGGGGAAATTTGGTAAAAGCAGTGTCCTTGGCATCACAATTGGTTTAGGAGTAGGCCTTGCACTACTTCTTGCAGTTATTCTGCTAAGAATGTCAAAGAGGGGTGAGGATAAACCAGTTGACAACTTTGATGAGGAGCTTAGCTGGCCAAACAGGATACCTGAAGCGCTTGTTACTTCAAAATTGGTGTTTTTTCAAAATTCAGATTGCAAAGGTCTCACAGTTGAAGATTTGATAAAATCCACTAACAATTTTAGCCAAGAAAATATAATTGGTTGCGGTGGGTTTGGTCTTGTCTACAAGGCGAATCTTCCCAATGGCACAAAGGTAGCTGTCAAGAAACTATCGGGATACTGTGGTCAGGTGGAACGAGAATTCCAAGCAGAAGTTGAGGCACTCTCAAGAGCTCAACATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATGTCAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGACTGTTGGCTGCATGAGAGTGAGGATGGAAATTCAGCTCTTAAATGGAATGTAAGACTCAAGATTGCCCAAGGTGCAGCTTATGGACTAGCTTATTTGCACAACGAGTGTGAACCACATATTGTGCACCGAGATATTAAGTCTAGCAACATACTTTTGGATGATAAATTCGAAGCTTATTTGGCTGACTTTGGTCTTTCAAGGTTACTTCAACCTTATGATACCCATGTTTCAACAGATTTAGTGGGAACATTAGGATATATTCCTCCTGAATATAGTCAAGCACTGAAAGCAACATTCAAGGGTGATATTTATAGCTTTGGTGTTGTTCTTATTGAGCTTCTTACTGGTCGAAGGCCTGTAGAAGTCATCGTCGGGCAATGCAACAGGAATCTAGTGTCATGGTTGTTTCAGATGAAATCTGAGAATAGGGACCAAGAAATTTTTGATTCAGTCATTTGGCACAAGGATAATGAGAAACAGCTCTTAGAGGTACTAACTATTGCTTGTAAATGTATAGATGAAGATCCAAGGAAGAGACCCCATATTGAATTAGTTGTTTCATGGCTTGATGGTGTAGGATTTGATGGTTCTGAACAGTCATCATCTTAA 3159 0.3989 MVLQRCCPMAFVQWSFLTCFICFSAGLETLARSCDKHDLLALKEFAGNLSIGSIITAWSDDVVCCKWVGVVCNDVVDGEAASRVSKLILPGMGLNGTISSSLAYLDELKVLNISFNGLQGGLPSEFSNLKQLEVLDLSHNMLSGAVGGPLSGLQSIQILNISSNLFVGDLFEIGGLEHLLALSISNNSFTGQFNSQICSSSKGIHILDISKNHFSGGLEWLGDCSTSLQELHLDSNLFTGYLPDSLYSMSALEQLSVSVNNLSGQLSMELSNLSNLKSLIISGNRFSGDLPNIFGNLLDLEQLVGHSNSFSGSLPSTLSLCSKLQVLDLRNNSFTGSVSLNFTGLSNLSTLDLGSNHFNGSLPNSLSNCHELTMLSLAKNEFTGQIPGSYANLSSLLTLSLSNNSFENLFGALYVLQQCKNISTLILTKNFHGEEIPENLTVSFKSLVVLALGNCGLKGRIPAWLLNCSKLEVLDLSWNHLEGSIPSWIGWMDHLFYLDLSNNSLMGEFPRSLTELKCLISLNYQLSSLFASAAIPLYVKRNKSDNGLQYNHASSFPPSIYLSNNRLNGTILPEIGRLKELHILDLSRNNLTGTIPSSISEMKNLETLDLSNNNLFGTIPSSFNSLTFLSKFSVAYNHLWGTIPSGGQFSSFPNSSFEGNLGLCGETYHHCNNEKKANMSSHSGGKFGKSSVLGITIGLGVGLALLLAVILLRMSKRGEDKPVDNFDEELSWPNRIPEALVTSKLVFFQNSDCKGLTVEDLIKSTNNFSQENIIGCGGFGLVYKANLPNGTKVAVKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHVNDRLLIYSYLENGSLDCWLHESEDGNSALKWNVRLKIAQGAAYGLAYLHNECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLIELLTGRRPVEVIVGQCNRNLVSWLFQMKSENRDQEIFDSVIWHKDNEKQLLEVLTIACKCIDEDPRKRPHIELVVSWLDGVGFDGSEQSSS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00600 1052 Gene3D Ribonuclease Inhibitor 173 390 IPR032675 -
Spst11g00600 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Spst11g00600 1052 Gene3D Transferase(Phosphotransferase) domain 1 844 1044 - -
Spst11g00600 1052 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Spst11g00600 1052 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Spst11g00600 1052 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Spst11g00600 1052 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Spst11g00600 1052 Pfam Leucine rich repeat 323 381 IPR001611 GO:0005515
Spst11g00600 1052 SUPERFAMILY Protein kinase-like (PK-like) 749 1039 IPR011009 -
Spst11g00600 1052 PRINTS Leucine-rich repeat signature 602 615 - -
Spst11g00600 1052 PRINTS Leucine-rich repeat signature 132 145 - -
Spst11g00600 1052 SUPERFAMILY L domain-like 459 665 - -
Spst11g00600 1052 PANTHER LEUCINE RICH REPEAT KINASE 2 271 1040 - -
Spst11g00600 1052 CDD STKc_IRAK 774 1041 - -
Spst11g00600 1052 FunFam Leucine-rich repeat receptor-like kinase 38 154 - -
Spst11g00600 1052 Gene3D Ribonuclease Inhibitor 391 680 IPR032675 -
Spst11g00600 1052 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 338 - -
Spst11g00600 1052 SMART serkin_6 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00600 1052 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 737 843 - -
Spst11g00600 1052 ProSiteProfiles Protein kinase domain profile. 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00600 1052 FunFam Leucine-rich repeat receptor-like protein kinase 844 1050 - -
Spst11g00600 1052 Gene3D Ribonuclease Inhibitor 35 152 IPR032675 -
Spst11g00600 1052 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Spst11g00600 1052 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Spst11g00600 1052 SUPERFAMILY L domain-like 40 303 - -
Spst11g00600 1052 Pfam Protein kinase domain 769 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00600 1052 SMART LRR_typ_2 393 412 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 226 248 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 468 492 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 273 296 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 129 152 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 578 601 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 105 128 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 345 369 IPR003591 -
Spst11g00600 1052 SMART LRR_typ_2 602 625 IPR003591 -
Spst11g00600 1052 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515
Spst11g00600 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 676 - -
Spst11g00600 1052 Gene3D Phosphorylase Kinase; domain 1 734 843 - -
Spst11g00600 1052 SUPERFAMILY RNI-like 225 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00600 Spst-Chr11 28027163 28030321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00600 65 1051 Receptor kinase-like Gene Family AT1G55610 34.093 1.20e-162 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Spst11g00600 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00600 - - gmx:100789534 1780.76