Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00594 ATGGAGGCCAGGAGTGTGGAGAGGAAGAGATCACTGGTTGAGAGAGTGAGAAAGAATGTGGAAGAGGAAGTGGAAAATGAAGTGGAAGAGGAGGATGAAAGTGGTGCCAGTCTCACTGAAGAAGAGAAGAAGAGAGGGGTTAGTAACAATAGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCCCCACCTTCATGTCAAGCTGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAAGTACCATCGCCGCCACAAGGTGTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTTGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAAGCTGCCAGTGAGGGCAGCAGCCAAAGCAGCAAAGGGCATCAGCACCCTAAGGAAACAACACACTGCAGGCTTGCTGATGAGAGGGGGAGAATTCAGATGAACCTGCCAGGGAGTTCAGGCTACAAGTCTTTCAACATCAGATGA 585 0.5231 MEARSVERKRSLVERVRKNVEEEVENEVEEEDESGASLTEEEKKRGVSNNSGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKKYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAASEGSSQSSKGHQHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00594 194 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 158 IPR044817 GO:0003677
Spst11g00594 194 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Spst11g00594 194 MobiDBLite consensus disorder prediction 1 71 - -
Spst11g00594 194 MobiDBLite consensus disorder prediction 1 23 - -
Spst11g00594 194 Coils Coil 3 41 - -
Spst11g00594 194 MobiDBLite consensus disorder prediction 161 175 - -
Spst11g00594 194 MobiDBLite consensus disorder prediction 134 194 - -
Spst11g00594 194 FunFam Squamosa promoter-binding-like protein 14 62 131 - -
Spst11g00594 194 Pfam SBP domain 70 143 IPR004333 GO:0003677
Spst11g00594 194 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Spst11g00594 194 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00594 Spst-Chr11 27982876 27984038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00594 54 153 SBP-box Gene Family AT1G53160 68.317 1.03e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst11g00594 SBP 8.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00594 - - gmx:100787416 277.33