LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g00593	ATGATTCAACAGACAAGCACTGACACAACATACTTGCTTTGTCTTCGATTCCTGTGTGGAACAACAAAGCAATCAAACTCCGACTTCAATCCAAATCTCCAACTTGGTATTCACCGAAGATTCATCTCTCTGTGCCCCTGGAACCCCACCTTCTTGCTCTTGTGCCCTCGCGCATTCAATTCTGGGGCAGTGTGTGAGGGTTCTGAAGGGTTTCTCCTTAGAATGGCTGACATAGCAGGTCTGGCTGAGGCTGCAGGGGCAAGATTTAGTTCATTGGAACTCATTGGGCAGGGATCATTCGGCGACGTCTATAAAGGGTTTGACAAGGAGCTAAATAAAGAAGTTGCTATCAAAATGATTGATTTGGAAGAATCAGAGGATGAAATAGAGGATATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATCTGCATACATCACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTGCAAGCTGGTCCCCCACTCGATGAAATGTCAATTGCTTGTATTCTACGCGATTTACTTCATGCAATTGATTACCTACATAGTGAAGGAAAAATTCATAGAGACATCAAAGCTGCAAACATTTTATTGACTGAGAATGGTGATGTAAAGGTTGCTGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGAAGAAAAACCTTTGTAGGAACACCATTTTGGATGGCACCTGAGGTTATTCAAAATTCAGAAGGATATAATGAAAAGGCAGATATCTGGTCTCTGGGGATAACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGACTAGATGACCACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGGCAAGTAGGCCAAGTGCTAAGGAGCTTCTTCGACATCGTTTCATTCGAAATGCCAGGAAGAGTCCTAAGCTATTGCAGAGAATAAGGGAGCGTCCGAAGTTCCTAATAAAGGAAGATCAGGTAACACCTAGAAATGCCCCGAGGGGGATGGGGGAGGCATCTGATACTATTAAGGTTGCCAAAGATCTAAGGGGTGATGAGACTAATCAGCCTAGTGGCCAAGGCAAAACCTTGAAAAGTTCTGGGTGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGACCACCTCAGTTTAGAGATAAGAAAACTGATGTTTCAAATCATCAGCTTAACCAAAGGAAAAGTCCAGATAGTGGCTATCAAGGGGGATCTGGCAATAAAATTGCACTTAATGAGTCGCTAGAGCCTTCTCTTGGAAAAGATTTTGGAGTTCCATACCATGATGAACATCCGGATAATCACCTTGACGATCAGGACGAGCTGTCTGGGAATGGATCTGGAACTATTGTTGTTCGGTCTCCAAAAGGTCCTCAGTCATCACTGTTTCGTGACCAAAGTTCCCGGTCTAGCAGCAGTTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTTGTTTTGCGTAACCAGCACGATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGGGACTTAATAGCAGAAATTCAAATGCCTCATTTGAGGATAGTGCCACAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGTGGATCGAGGAAAGTAAATGCCCGGGAGAAATTTGCGCTGGGAAAACTCAACAATGATGTACAGGAAAACAGGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCCAGACTATCTCGTGAATACATTGATTCACAAAAGGGAATTTCAAGATCAAATTATGCTATTGATGATGAAGAAAGTGACAAAATAATCTCATCCTCTGCGCCTTTATCTGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTTCTGAGGATCCAGAAGGGCCAATTGTGCAAATTGTTATCAATGCTCTTGTAAACATGGAGAGGACAAAGCCTCAATCCTGTGATGCTCTTGTCAAAAAATTGCTTCAGCGGTTGGCCAGTTCAAAGGAATCTCCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATACTCAGTAAGACTAAGTCAGCTGAAGAAACCCGAAATGCAGAGGCAGATAACAAGAAGAAACCAAACAAGGAACTTCATTCAAATAGCAATTTAAGCCCCCTTGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACGGGATCTAAATCCATCATGA	2298	0.4273	MIQQTSTDTTYLLCLRFLCGTTKQSNSDFNPNLQLGIHRRFISLCPWNPTFLLLCPRAFNSGAVCEGSEGFLLRMADIAGLAEAAGARFSSLELIGQGSFGDVYKGFDKELNKEVAIKMIDLEESEDEIEDIQKEISVLSQCRSAYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQAGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRLDDHFSRYMKEFVSLCLKKVPAEASRPSAKELLRHRFIRNARKSPKLLQRIRERPKFLIKEDQVTPRNAPRGMGEASDTIKVAKDLRGDETNQPSGQGKTLKSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTDVSNHQLNQRKSPDSGYQGGSGNKIALNESLEPSLGKDFGVPYHDEHPDNHLDDQDELSGNGSGTIVVRSPKGPQSSLFRDQSSRSSSSYASFEDVSTSGTVVLRNQHDDSDSPQTPRSRLGLNSRNSNASFEDSATNLAEAKAAIQGGSRKVNAREKFALGKLNNDVQENRRDQMSSSSDSSRLSREYIDSQKGISRSNYAIDDEESDKIISSSAPLSVLLIPSLKEAISEDPEGPIVQIVINALVNMERTKPQSCDALVKKLLQRLASSKESPLKDLQELAGQILSKTKSAEETRNAEADNKKKPNKELHSNSNLSPLARFLLSRWQGQTSRDLNPS	765

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	483	556	-	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	465	482	-	-
	Spst11g00593	765	ProSitePatterns	Protein kinases ATP-binding region signature.	95	118	IPR017441	GO:0005524
	Spst11g00593	765	ProSiteProfiles	Protein kinase domain profile.	89	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst11g00593	765	Coils	Coil	115	142	-	-
	Spst11g00593	765	PANTHER	STERILE20-LIKE KINASE, ISOFORM B-RELATED	85	712	-	-
	Spst11g00593	765	FunFam	serine/threonine-protein kinase dst1 isoform X1	86	364	-	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	590	617	-	-
	Spst11g00593	765	SUPERFAMILY	Protein kinase-like (PK-like)	88	361	IPR011009	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	597	617	-	-
	Spst11g00593	765	CDD	STKc_MST3_like	88	351	-	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	719	737	-	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	432	454	-	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	383	416	-	-
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	380	556	-	-
	Spst11g00593	765	Gene3D	Transferase(Phosphotransferase) domain 1	86	361	-	-
	Spst11g00593	765	Pfam	Protein kinase domain	90	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst11g00593	765	MobiDBLite	consensus disorder prediction	715	743	-	-
	Spst11g00593	765	SMART	serkin_6	89	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst11g00593	Spst-Chr11	27964285	27975862	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst11g00593	75	762	MAP Kinase Kinase Kinase Kinase	AT3G15220	62.304	0.0	813

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-YSK	Spst11g00593		Pkinase	1.4e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g00593	K08838		-	gmx:100786501	1169.07