Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00576 ATGAGGAACGCACTCATCAGTTCCCACACACCCTTAGCAAACCCAATTAATCTCATTGTTCCAAAGTTTCAATCAATCAGATCCTCCACCATCCAAATGGGGGATTTCATCTTCTCCTTCAAGACCCAGGAATATGCTCTCCAGAGAGCAAAACACAACAAGAAGAGGCTAACTGAGGACCAGGTTGCCATTCTCGAGAAGTGCTTTGCCTCCAACATGAAGCTTGAACCGGAGCAGAAGTTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGGTGGACCATGGTGTGCTTCAGGCAAAGCTGGAGAATGTGATGGCTGAAAAGAAGCAGCTAGAGAGAGATGTGGAGAGGCTCAAAGCTGAGCTGCAGAAAGCACAAGAGATGATTCTAATTGGCAATGTTGTCAAAGGTGGAGACAATAGCGATAATAATAATCATAATCATCATAATAACAATAATACTAATAATGGTTCTTGTTGTGAGTTTTCAACTTCTTTTGAAGAGGGAGGGAGCTCAGGGGTAGTGCTTGATGATGCTACTCATCATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTTTATGCTTACTTCATGGGTGCAAATTATGGGTCAAGCTTGCATGAGAAAAGGGCATAA 708 0.4435 MRNALISSHTPLANPINLIVPKFQSIRSSTIQMGDFIFSFKTQEYALQRAKHNKKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLERDVERLKAELQKAQEMILIGNVVKGGDNSDNNNHNHHNNNNTNNGSCCEFSTSFEEGGSSGVVLDDATHHHECWQSGEVMQVEELYAYFMGANYGSSLHEKRA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00576 235 Coils Coil 114 148 - -
Spst11g00576 235 Gene3D - 48 113 - -
Spst11g00576 235 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Spst11g00576 235 FunFam Homeobox-leucine zipper protein ATHB-52 44 110 - -
Spst11g00576 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 178 IPR045224 GO:0003700
Spst11g00576 235 SUPERFAMILY Homeodomain-like 37 109 IPR009057 -
Spst11g00576 235 SMART HOX_1 50 112 IPR001356 GO:0003677
Spst11g00576 235 Pfam Homeodomain 53 106 IPR001356 GO:0003677
Spst11g00576 235 CDD homeodomain 51 109 IPR001356 GO:0003677
Spst11g00576 235 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00576 Spst-Chr11 27798133 27798840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00576 49 229 Homeobox Transcription Factor Family AT5G53980 42.308 1.92e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst11g00576 Homeodomain 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00576 - - gsj:114378167 320.857