Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00572 ATGCATGTCATTATACTTGGGATAAAAGCTAATGAGAGTTCAGATGTTAAGGGCATAATAGGAGCTATTTTGGATAGCAGTTCTCGCATTGGCCAAGAACGTGCAGTGGCTATAAAGCTGGCACTGGAAGACTTTCATCAAAAAAATAATCTCAGTTTTGTTCTGCATGTAAGAGACTCTCAAGGAGATCCTCTTTCAGCAGCTATTGCAGCTAGAGATCTGATTGATAATAAAAAGGTGAAAGCCATCATTGGACCACAAACATGGGCAGAGACATCATCAGTGGCTGAAATCTGTACCCAGAAGAGCATACCCCTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTTCTGCAATCCTCACCTAGCCAAATTATGCAAATGAAAGCTATTGCTGAGATTGTAAAGTCTTGGCAACACTATAACATTACCTTGATATATGAAGATGGAGATTCATCATCTACTGAAGTTTTTTCTCAACTCCTTGGAGCTCTTAAAGAAGTTGGAACAGAATTAAGCAATGTTCTGGTAGTTCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAGCTAAGAGAAGGACAATGCAGCGTCTTTATTGTCCATTTGTCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAACATTGAATATGATGAAGGGAGGTAATATATGGATCACTACTGGTACCTTTACAAGCTTTATTCATTCCCTGAATGCATCTGCTATTTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTATTTACCAAATCTGCTGGTCCAGAATGCAATCTTCTACCGTAGATTTCGGACAAAATTTTGCTCAGAGAATTTTGAAGAGTTTAATTATGAGCCTGGAATCTTCGCAGCCGAGGCTTATGATGCTACATGGATTGTGGCTCATGCAATGAGAGAAACCAACCAAAGAGGGGGTCAAATTTTGCTAGATAGGATTTCACTCAGTAGTTTTGCTGGATTAAGTGGAAAAATTCAGTTCACTGACCACAGAGTAGCATCAGCACATACATTTCAAATCATTAATGTGATAGGGAGAAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAATCTTTGGATCAAACTGCTTCTTACAGTTCTTCAGTGAAGGATTTAGCACAAGTAGTTAATCCAACCTGTGTTTTACGACTAAGAATTGGTGTCCCCTCCAAATCAACATTCAAACAGTATGTCAATGTTATTCAAGATGATTCTGGAAATGTCACTTCCTTCAAGTTCAAGGGATTTGCTATAGACCTCTTCGAAGAAACAGTAAAAAAATTGCCATACCAATTGGAATATGATTATTTTGCATTCAATGGCTCCACATATGATGAACTGGTGAAGAAAGTTCAATCGAAGGAATATGATGCAGTTGTTGGTGATGTAGCAATAGTGTCCACGCGGTATGAATTTGTTTCATTTACTCAGCCCTATACTGATCCGGGGATGGTGATGATTGTTCCTGTTAAATCAAAAACAGGCAACAGAGCGTGGCTATTCATGAAACCTTTCACAAAGTTCATGTGGGTTCTAATATTGGTCATCATTGTCTACAATGGCTTTGTTGTATGGTTAATTGAAAGAAACCACCGCCCTGAACTGAAGGGTTCTATTCTGCATCAAACCACAACTCTGCTGTCGTTGGCTTTCTGTTCCTTGTTCACTTTGAATGGGGACGGATTGCACAGCAATTTATCAAGGGTGGCAATGATGGTATGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACGGTTTGAAGCAACTGTAGACAGCATTCAGCAGCTAAAAAACAACAATGCCAAGGTAGGATATGATAGAGGGTCCTACTTGAACAGATATCTCCAGGAGGTGTTGGGCATCAAAGCTGAAAACATCAAGCAATTTGAGTCACCGGAGAGCTATGTTGATGCCCTAAGAAACAAAGAAATAGCAGCTGCCTTCTTTGATGTCCCTGAGGCCAAAATTTTCCTTGCAAAGAACTGTAAAGGATTTGTTCAAGCAGGACCTACATACAAAATTGGAGGATATGGATTTGTATAG 2145 0.4014 MHVIILGIKANESSDVKGIIGAILDSSSRIGQERAVAIKLALEDFHQKNNLSFVLHVRDSQGDPLSAAIAARDLIDNKKVKAIIGPQTWAETSSVAEICTQKSIPLLSLADATPEWAMKKWHFLLQSSPSQIMQMKAIAEIVKSWQHYNITLIYEDGDSSSTEVFSQLLGALKEVGTELSNVLVVPPLVSSSLSQQLEKLREGQCSVFIVHLSFPLALHLFETAKTLNMMKGGNIWITTGTFTSFIHSLNASAISNMQGIIGVKSYLPNLLVQNAIFYRRFRTKFCSENFEEFNYEPGIFAAEAYDATWIVAHAMRETNQRGGQILLDRISLSSFAGLSGKIQFTDHRVASAHTFQIINVIGRSYREIGFWSDGLGFSKSLDQTASYSSSVKDLAQVVNPTCVLRLRIGVPSKSTFKQYVNVIQDDSGNVTSFKFKGFAIDLFEETVKKLPYQLEYDYFAFNGSTYDELVKKVQSKEYDAVVGDVAIVSTRYEFVSFTQPYTDPGMVMIVPVKSKTGNRAWLFMKPFTKFMWVLILVIIVYNGFVVWLIERNHRPELKGSILHQTTTLLSLAFCSLFTLNGDGLHSNLSRVAMMVWLFVALIITQTYTASLASMLTVERFEATVDSIQQLKNNNAKVGYDRGSYLNRYLQEVLGIKAENIKQFESPESYVDALRNKEIAAAFFDVPEAKIFLAKNCKGFVQAGPTYKIGGYGFV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00572 714 CDD GluR_Plant 405 714 - -
Spst11g00572 714 Pfam Ligand-gated ion channel 531 661 IPR001320 GO:0015276|GO:0016020
Spst11g00572 714 Gene3D - 130 372 - -
Spst11g00572 714 SMART GluR_14 405 714 IPR001320 GO:0015276|GO:0016020
Spst11g00572 714 Pfam Receptor family ligand binding region 34 361 IPR001828 -
Spst11g00572 714 FunFam Glutamate receptor 403 519 - -
Spst11g00572 714 SUPERFAMILY Periplasmic binding protein-like I 19 373 IPR028082 -
Spst11g00572 714 Pfam Bacterial extracellular solute-binding proteins, family 3 434 710 IPR001638 -
Spst11g00572 714 CDD PBP1_GABAb_receptor_plant 20 381 IPR044440 -
Spst11g00572 714 Gene3D - 519 652 - -
Spst11g00572 714 SUPERFAMILY Periplasmic binding protein-like II 406 714 - -
Spst11g00572 714 Gene3D - 21 352 - -
Spst11g00572 714 Gene3D - 404 518 - -
Spst11g00572 714 FunFam Glutamate receptor 520 658 - -
Spst11g00572 714 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 713 IPR015683 -
Spst11g00572 714 FunFam Glutamate receptor 134 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00572 Spst-Chr11 27760339 27764257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00572 11 714 Ion Channels AT2G29120 30.975 8.50e-107 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00572 - - gmx:100818623 1159.82