Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00569 TTATTTGAAATAATTGATACCAATGAGGACAACAAGGTCTCAAGGTCTGAGTTACAAAAACTTGTGCAGGACATTCAGTTTCATAATGCAGAAGAAGCAGTTACAAAAATGTTTCAAGAACTTGACCTTAACAGAGACGATGAAATAAGTGAGAAGGAATTTGTTAATAGGTTTACAAAATTGCTGAACACAAGTTCAGGTCAAGTACCTCACTCAATGTCTCTGCCTCATGAAAATCATCAATTGGTGAAAGGTAAACAAAACAAAGGAGTACATGCATGGTTAAATGCATTGGGATATGTGGTGCTAGGAATTACTATGTTGTCTCTTCTTGCTGAGCCCCTGATAGAAAGTGTCCAGAAATTCTCTGAAGAAGCAGGAATTTTCTCATTTTTCATCTTATTTATTCTAGTACCCCTGGCTACAAATTTTAGAGAAGCAAGCTCAGCCATCAGAGAAGCTAGCCATAAGAAGAACGGCAATACTTCTCAAACAATTTATGAGATTTATGGAGCAGTATTCATGATTCTTGGCTTTGTGGTGATCTCCATCCTTATATATGTGAGAGATATCAGTTGGCAATTCTCAGCTGATGTATTGGTTGTCGCAATCATCTCAGGACAAGGAAATTTTACGAAGCAGTCAAATGTAATGAACCGACCAAGAATCGTCGCATTGCATTCCCAAAAAGTCACAGTAATAAAATCGCAGGCGAAGCGTCACAGTCACTCCCTTCCTCACACAAAAAAAAAGTGTCACCCTTCGCCCAACCCACACCTTAGGGTTCTTCGCTTAGTTTCTTCTCCTTCTAACTCAACAACAAGCCACCAGAAAAACAAATTCACATTCCCCAAAACACCCTTAGCGCACCGCATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGATCGTACGAGCTGGCGATTGCGTTCTGATGCGACCTTCGGACACGTCGAAGCCCCCTTACGTGGCCCGTGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGGGGTCGCAGACAGTTCCATGGAGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCGCACACCATTGAAGGCAAGTGCGTAGTGCACTCTTTCAAGAACTACACTAAGCTCGAGAATGTGGGTGCTGAGGATTATTATTGTAGATTTGAGTACAAGGCTGCAACTGGGGCTTTCACGCCTGACCGTGTTGCAGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTGTGTTTTGAATGTTTATCTGATGATGATATGAAGAAACCGCAAGCTACATTTTCCGTATCACCAGGAGCTGATGGCAAGGTGGAGCCCAAGCGAAGAAAGAGATGA 1524 0.435 LFEIIDTNEDNKVSRSELQKLVQDIQFHNAEEAVTKMFQELDLNRDDEISEKEFVNRFTKLLNTSSGQVPHSMSLPHENHQLVKGKQNKGVHAWLNALGYVVLGITMLSLLAEPLIESVQKFSEEAGIFSFFILFILVPLATNFREASSAIREASHKKNGNTSQTIYEIYGAVFMILGFVVISILIYVRDISWQFSADVLVVAIISGQGNFTKQSNVMNRPRIVALHSQKVTVIKSQAKRHSHSLPHTKKKCHPSPNPHLRVLRLVSSPSNSTTSHQKNKFTFPKTPLAHRMAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCFECLSDDDMKKPQATFSVSPGADGKVEPKRRKR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00569 507 MobiDBLite consensus disorder prediction 488 507 - -
Spst11g00569 507 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Spst11g00569 507 ProSiteProfiles EF-hand calcium-binding domain profile. 1 28 IPR002048 GO:0005509
Spst11g00569 507 ProSitePatterns Zinc finger PHD-type signature. 432 477 IPR019786 -
Spst11g00569 507 FunFam Bromo-adjacent homology (BAH) domain-containing protein 424 495 - -
Spst11g00569 507 ProSiteProfiles EF-hand calcium-binding domain profile. 29 64 IPR002048 GO:0005509
Spst11g00569 507 SMART efh_1 1 25 IPR002048 GO:0005509
Spst11g00569 507 SMART efh_1 33 61 IPR002048 GO:0005509
Spst11g00569 507 CDD BAH_BAHCC1 313 447 - -
Spst11g00569 507 Gene3D - 271 423 IPR043151 -
Spst11g00569 507 MobiDBLite consensus disorder prediction 236 257 - -
Spst11g00569 507 CDD EFh 2 59 IPR002048 GO:0005509
Spst11g00569 507 ProSiteProfiles Zinc finger PHD-type profile. 429 480 IPR019787 -
Spst11g00569 507 Pfam EF-hand domain pair 2 57 IPR002048 GO:0005509
Spst11g00569 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 491 IPR013083 -
Spst11g00569 507 Pfam BAH domain 314 426 IPR001025 GO:0003682
Spst11g00569 507 MobiDBLite consensus disorder prediction 236 258 - -
Spst11g00569 507 FunFam Chromatin remodeling protein EBS 286 423 - -
Spst11g00569 507 SUPERFAMILY FYVE/PHD zinc finger 423 481 IPR011011 -
Spst11g00569 507 SMART PHD_3 431 478 IPR001965 -
Spst11g00569 507 SUPERFAMILY EF-hand 1 63 IPR011992 -
Spst11g00569 507 PANTHER OS08G0421900 PROTEIN 292 498 - -
Spst11g00569 507 ProSitePatterns EF-hand calcium-binding domain. 6 18 IPR018247 -
Spst11g00569 507 Gene3D - 1 71 - -
Spst11g00569 507 SMART BAH_4 312 427 IPR001025 GO:0003682
Spst11g00569 507 Pfam PHD-finger 431 479 IPR019787 -
Spst11g00569 507 ProSiteProfiles BAH domain profile. 312 427 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00569 Spst-Chr11 27677446 27685914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00569 1 205 EF-hand Containing Proteins AT1G53210 33.051 6.50e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst11g00569 BAH 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00569 K25868 - gmx:100800993 452.21