Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00564 ATGGCAGGAACTTTTGGAAGAAGCAGAAGCAAGTTTCAGAGTTGTGGCAGTTGCACAAGCAACAAGAAGGGGAGAGTGGAAAGAAACAAAGCTGGGAGTGCAAGGAATCATCAAGCCATTAGGAATAAGTGCAAAGCTTCATTAAAAGCTGGAAGAGGAAAATCCCAACAGCAACACCAACAACGACATGTAACAACAGAGGAAGAAGAAGAAGAAGGAGAAAACCAACAAGACCACCAATTCCAACACCTCCATCTACTACAGCATCATCAACAACGACGACAAGGAGAACAAGAATCTTACACAGGTTTAGACACGGAGCTCTTAAACCCACTTCAACCGCCAAAGAAACGGTCTTCCCTCCTCCCTCCTCTACCACCACCGCCTTCGTTGCTTACTTCAACCGAACATGCGAGAAAGATGGGAGAATCACAGAACCACCATCTCCACCACCAAGCAGCAACACCGTCGAGATCGGCGATGAGAGGCGGCGGTGGCGAGATCGTGGAGGTGCAAGGCGGTCACATTGTCCGCTCGACCGGGCGGAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGTCCCAGAGACCGCCGTGTGCGCCTGGCGGCTCACACCGCCATCCAATTCTACGATGTCCAGGATCGCCTCGGCTACGACCGCCCCAGCAAGGCGGTCGACTGGCTCATAAAAAAAGCCAAGGCGGCCATCGACGAGCTGGCAGAGCTCCCACCATGGAACCCGACAGCCACGTCAATGCAAACGCCTCAGCAGCAGGAACTCGTCCACGGCGAGAGCAAGTCTCTCTCTATGAACGACCCAATAGCCGCCTTCAGTAGCGGTGGCGAGAGCAACGCTCTCGCTGCGGCGACTAGAGTTCCAGAACACTTCTCTCACCAACAATTGGAGAGTGGGAATGCTAACCACATAAGCAACAGCAAGTACAACACTGGCTCTGGTTTTCTGCCACCGTCTTTGGACACTGATAACATTGCTGAGACAATCAAGACTTTCTTTCCCGTGGAAGCTACCACGACGTCGTTTCAGAGTTACCCTCCGGCGCCGCCGGATTTGAGGCAGCAAGATCTGCGTTTGTCGTTACAGTCCTTCCAGGACCCTATCATGCTTCACCACCAGCCTCAGAGCCACCACGAGCCGGTGCTCTTCGCTGGAACTGCGCTAGGCTTCGACGGCGGTTCCGGCTGGTCGGAGCACCAGCACCAGCAGCACCACCACCACTCGGAGGAGCATAGATTGCTCTTTGGTGGCAACAGTGGCCATGGCGGTGGGTTTGTATTCAACACGCCGTCGCCGGTTCCGTTGCCGGCGCCCGCGTTTGGTCAATTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGGTTCGTGCTTGGATAGACCCTTCGGCCGATCACCACCACCACCACCATCACTACCTCTCGTCGTTGATCCACCAGGGCTCCGTTGCCGGCGGCAGTGGCTTCTCCACCGGCGGTGGATTCTCCGGCTTCCGCATTCCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCCGACAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCATTGA 1605 0.5551 MAGTFGRSRSKFQSCGSCTSNKKGRVERNKAGSARNHQAIRNKCKASLKAGRGKSQQQHQQRHVTTEEEEEEGENQQDHQFQHLHLLQHHQQRRQGEQESYTGLDTELLNPLQPPKKRSSLLPPLPPPPSLLTSTEHARKMGESQNHHLHHQAATPSRSAMRGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPTATSMQTPQQQELVHGESKSLSMNDPIAAFSSGGESNALAAATRVPEHFSHQQLESGNANHISNSKYNTGSGFLPPSLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLRQQDLRLSLQSFQDPIMLHHQPQSHHEPVLFAGTALGFDGGSGWSEHQHQQHHHHSEEHRLLFGGNSGHGGGFVFNTPSPVPLPAPAFGQFFSQRGPLQSSNTPSVRAWIDPSADHHHHHHHYLSSLIHQGSVAGGSGFSTGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00564 534 MobiDBLite consensus disorder prediction 1 79 - -
Spst11g00564 534 MobiDBLite consensus disorder prediction 511 534 - -
Spst11g00564 534 MobiDBLite consensus disorder prediction 177 195 - -
Spst11g00564 534 MobiDBLite consensus disorder prediction 7 22 - -
Spst11g00564 534 MobiDBLite consensus disorder prediction 107 195 - -
Spst11g00564 534 ProSiteProfiles TCP domain profile. 182 240 IPR017887 -
Spst11g00564 534 MobiDBLite consensus disorder prediction 117 131 - -
Spst11g00564 534 MobiDBLite consensus disorder prediction 506 534 - -
Spst11g00564 534 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 155 458 IPR005333 GO:0003700
Spst11g00564 534 Pfam TCP family transcription factor 181 303 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00564 Spst-Chr11 27632073 27633768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00564 150 534 TCP Transcription Factor Family AT1G53230 48.775 3.05e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst11g00564 TCP 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00564 - - gmx:100800275 567.77