Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00527 ATGCATCGGTTAATTGTTTCCTGGTTTTGTCAATGCTTGCTTTGTGGTGATGATGTGGAATTCTTGCGTGCCTTGTGTGATAACGAAATTGTGATCTGGCTCGGACGAGTGTGGACTCTTGTTCCATCCAAACTCCATCCACCTAGCAAGATGGGAGGTGGCTTCAGAGTGCTTCACTTAGTTAGACCATTTCTCTCATTTCTTCCAGAAGTTCAGACTGCTGACAGGAAGGTTCCATTTAGAGAGAAGGTCATATATACTGTGATATCTCTATTCATTTTCCTTGTTTGCAGTCAGCTCCCTCTGTATGGAATTCACTCAACGACTGGTGCAGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCGAACCGTGGAACTGTTATGGAGCTGGGAATCACCCCCATTGTGACTTCTGGGCTGGTAATGCAACTTTTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGCGCTCTCTTAAATGGTGCTCAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGGATGTATGGTAGTGTGGGCCAACTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTCTGTTTTGCGGGTATTATTGTGATATGTTTAGATGAGCTCCTTCAGAAAGGGTATGGTTTGGGATCTGGAATTTCTCTATTCATTGCCACTAATATATGTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATCAATAGTGGACGGGGAGCTGAATTTGAGGGTGCTGTCATTGCTCTATTCCATTTGTTGATAACTAGAATAGACAAGGTTCGAGCACTTCGTGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTTTTGCCCGTCAGATCAAAAAATGCCCGTGGGCAGCAGGGTTCATATCCAATCAAGCTATTTTATACCTCCAATATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGCTTCTACACAGAAAGTACAGTGGAAACTTCTTTGTCGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCGTACTACATCACTGCACCTTCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTGTTCTACCTTGTGTTTATGTTGTCAGCATGTGCCTTGTTCTCTAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACATCGGGAGTCAAACTTGCAGAAAGAACTGAACCGATACATTCCCACTGCTGCCGCATTTGGAGGCATGTGTATTGGTGCCCTGACAGTGTTAGCAGATTTCATGGGGGCAATCGGTTCAGGGACAGGAATATTGCTCGCAGTAACAATCATATATCAGTACTTCGAGACTTTTGAGAAGGAGAGAGCTAGCGAGCTTGGCTTCTTTGGTTTCTAA 1581 0.4428 MHRLIVSWFCQCLLCGDDVEFLRALCDNEIVIWLGRVWTLVPSKLHPPSKMGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRIDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVDLLGKWKESEYGGGQSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00527 526 PIRSF SecY_Sec61alpha 58 521 IPR002208 GO:0015031|GO:0016020
Spst11g00527 526 Gene3D SecY subunit domain 59 524 IPR023201 -
Spst11g00527 526 NCBIfam preprotein translocase subunit SecY 81 517 IPR002208 GO:0015031|GO:0016020
Spst11g00527 526 SUPERFAMILY Preprotein translocase SecY subunit 60 516 IPR023201 -
Spst11g00527 526 ProSitePatterns Protein secY signature 1. 127 146 IPR030659 -
Spst11g00527 526 Pfam SecY 127 509 IPR002208 GO:0015031|GO:0016020
Spst11g00527 526 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 68 520 IPR002208 GO:0015031|GO:0016020
Spst11g00527 526 FunFam Transport Sec61 subunit alpha isoform 2 59 524 - -
Spst11g00527 526 Pfam Plug domain of Sec61p 92 126 IPR019561 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00527 Spst-Chr11 27227981 27231532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00527 51 526 Miscellaneous Gene Families AT2G34250 93.487 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00527 K10956 - gmx:100795147 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00527 11 27227981 27231532 Spst11g00527 11 27227981 27231532 ECH