Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00494 ATGCACTCCTCCACCACCTTCCTCAACGACCTTCCTCCCCTCAAGAGACTCAGACTCATTCAACAACAACAACAACAACACCTAAATCATTGTCATCACTCTTCACCTTTACCCGCCAAAAAACGCAAGGAGTCTCGAACCATTCATAATTTTTCCCTCCCCGCCAAGAAAAGAGTGTGGGCTCCACAACCCCAAAGTCCCCCCTCCCCAAACGACACCGTTCCCCCTTTCGAAACCTCACCATCAACCGACGCCGATCCTCCCTTCGACCTGAACGTCGAATACAACCCCAGCCTCGGAGAATCCGATGACGACGACGGGGTTTTATGCTGTGTGTGCCAGAGCACGGACGGGGACCCTGCGGACCCAATCGTGTTCTGCGACGGGTGCGACCTCACGGTGCATGCCTCCTGCTACGGCCACCCTTTATCCAAAGCCATCCCCGACGGAGACTGGTTCTGCGAACGGTGTCGTTTCGAAGAATCCAACGACAATAACAAAAGCATCACGCGCTGCTCGTTGTGCCCCGCGAGTTACGGCGCGCTGAAGCGTACCGCAGACGGCGCGTGGGCGCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTCTTTCTGGACCCCGAAGGAAGGGAGGGAATCGACTGCTCCATGGTTCCGAAGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGAGTGTTGTGACGGGTGTGCTCTGGTGTGTTCTGAGCCAAAGTGTGGATTGGCGTTCCATGTGACGTGTGCGCTGAAGGAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGGGGCACCATTGTTGCTGGATTCTGCAAAACCCACACCCAAGTATGGGAAAAGCAACAGCAATCTGGGAAGTACAAAATCGTACCTGTTGAAAATGAAAAATAG 909 0.5468 MHSSTTFLNDLPPLKRLRLIQQQQQQHLNHCHHSSPLPAKKRKESRTIHNFSLPAKKRVWAPQPQSPPSPNDTVPPFETSPSTDADPPFDLNVEYNPSLGESDDDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSKAIPDGDWFCERCRFEESNDNNKSITRCSLCPASYGALKRTADGAWAHVVCALFVPEVFFLDPEGREGIDCSMVPKKRWSQRCYLCECCDGCALVCSEPKCGLAFHVTCALKEELWIEYKEGKKGGTIVAGFCKTHTQVWEKQQQSGKYKIVPVENEK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00494 302 MobiDBLite consensus disorder prediction 61 75 - -
Spst11g00494 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 283 IPR013083 -
Spst11g00494 302 CDD PHD_BRPF_JADE_like 109 157 - -
Spst11g00494 302 ProSitePatterns Zinc finger PHD-type signature. 110 157 IPR019786 -
Spst11g00494 302 MobiDBLite consensus disorder prediction 21 103 - -
Spst11g00494 302 Pfam PHD-zinc-finger like domain 171 279 - -
Spst11g00494 302 PANTHER PHD FINGER PROTEINS 65 286 - -
Spst11g00494 302 SUPERFAMILY FYVE/PHD zinc finger 75 159 IPR011011 -
Spst11g00494 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 162 IPR013083 -
Spst11g00494 302 ProSiteProfiles Extended PHD (ePHD) domain profile. 169 281 IPR034732 -
Spst11g00494 302 Pfam PHD-finger 110 159 IPR019787 -
Spst11g00494 302 ProSiteProfiles Zinc finger PHD-type profile. 107 160 IPR019787 -
Spst11g00494 302 SMART PHD_3 109 158 IPR001965 -
Spst11g00494 302 SMART PHD_3 226 281 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00494 Spst-Chr11 26743755 26745396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00494 23 302 C2H2 Transcription Factor Family AT3G14740 49.249 8.24e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst11g00494 zf-HC5HC2H_2 4.1e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00494 K11380 - gmx:100786929 435.261