Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00490 ATGACTTGTTTCCCTTTCTCATTTGGTAAGAAAGTGCCTTCCGTGGCAAAACACAATCCAGATATTGATGAAGAACTATCAGGCATTCAAAATGTAAGAATCTTTACCTTCAAAGAATTAAAAGTTGCATCAGACAATTTCAGTCCGGCCAATAAAATTGGGCAGGGTGGCTTTGGATCTGTTTATAAGGGGTTGCTAAAAGATGGGAAACTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAAGTCAAGGGGTGAGAGAATTTATGACAGAAATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATAACCGAATATTAGTCTACAATTATCTTGAGAACAATAGTCTTGCGCAAACCCTTCTAGGTTCAGGTCACAGTAACATCGTTTTTGATTGGAAAACACGATCTCGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTGCATGAAGAAGTAAGACCGCATATTGTTCACAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAAACCTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACGCGTGTGGCGGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCACCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTCGAGATAGTAAGTGGCAGATGTCACACAAATACACGACTACCGAGAGGAGAGCAGTATCTTTTAGAAACGACATGGGAACTTTATAAGCAAAGGGAATTGGTAGGGCTTGTAGATATATCCCTAGAAGGGCATTTCGACGCTGAGGAGGCCTGTAAATTTCTGAAAGTTGGACTTCTTTGCACTCAAGACACTTCAAAACTCCGGCCACCAATGTCTTCTGTAGTGAAGATGCTCACTGGAGAAATGGATATTGATGAAAGTAAGATAACAAAGCCAGGCTTGATTTCAGATTTCATGGACCTTAAAATCAGAGGAGAAAACAATGGTGGGGATAATGATACCAAGGGTTCATCTTCCTACAATGCATCCTCTGCTTCAGACAGCCAGGGTAACACCATGTCATATGCTGCAAGTACAACTGCAACCTTCTCTGCCAAATATGATCAAAGCTTGTGA 1176 0.4073 MTCFPFSFGKKVPSVAKHNPDIDEELSGIQNVRIFTFKELKVASDNFSPANKIGQGGFGSVYKGLLKDGKLAAIKVLSAESSQGVREFMTEINVISEIEHENLVKLYGCCVEGNNRILVYNYLENNSLAQTLLGSGHSNIVFDWKTRSRICIGIARGLSYLHEEVRPHIVHRDIKASNILLDKNLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPRGEQYLLETTWELYKQRELVGLVDISLEGHFDAEEACKFLKVGLLCTQDTSKLRPPMSSVVKMLTGEMDIDESKITKPGLISDFMDLKIRGENNGGDNDTKGSSSYNASSASDSQGNTMSYAASTTATFSAKYDQSL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00490 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Spst11g00490 391 MobiDBLite consensus disorder prediction 350 372 - -
Spst11g00490 391 FunFam cold-responsive protein kinase 1 17 122 - -
Spst11g00490 391 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00490 391 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00490 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 360 - -
Spst11g00490 391 MobiDBLite consensus disorder prediction 346 372 - -
Spst11g00490 391 Pfam Protein kinase domain 50 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00490 391 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Spst11g00490 391 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Spst11g00490 391 CDD STKc_IRAK 53 320 - -
Spst11g00490 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Spst11g00490 391 FunFam cold-responsive protein kinase 1 123 334 - -
Spst11g00490 391 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00490 Spst-Chr11 26703777 26707501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00490 21 331 Receptor kinase-like Gene Family AT1G53430 56.090 1.62e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst11g00490 Pkinase 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00490 - - gmx:100800503 678.707