Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00488 ATGGCAGAGGAAGTTCCTGGGATTGAAGAAGCTGCTGAACCTCCAGCATCACCTAAACCATCTACAGTTGTGGCACATAATATGGAAACAGAACAAATGACTCCTACAAAGTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGGAAACATATATCTTTACTTGTGAATCTCTTCAAAGTTTCTGTTAATGCTCCAGACACAGTCTTTTTCCAGTATAATGTTGCTATTACTTTAGAAGATAAACGAGCTGTTGATAGCAAGGGTATTGGGAGAAAAGTAATTGATAGGCTTTACCAAGCATATGCATCTGAACTTGGTGGCAAAAGGTTTGCTTATGATGGAAAGAAAACTTTGTACACAGTGGATAATCTGCCACGTAATGAGTTCAAAGTGTCGCTGGAGGAACCATTTGCAAAACGTAGTACAGAGTGTCCTGGTGCTGATGGAAGCCTTCTTGAGGAAACTAAAAGGTCAAAATGTTATTCTCAGTCAAAGATATTCATGGTGGAGATAAGTTTTGCTGCCAAAATACCCCTGCAGTCCATTGCTATTGCCCTCAAAGAGGCTGAATCAGATGCCAATTCTGAAGATGCATTGAGAGTGCTTGATACTGTACTAAGGCAGCGTGCAGCTAACTGTGATGTTGGGGCTGGTCTAACAGCAGTCTCGGGTTTTCATTCAAGTTTTCGTCCCACACAGCGAGGATTGGCTCTCAATATGGATGTGTCAACAACTATGATCATAAAACCTGGTCCTGTTATTGATTTTCTGTTATCAAATCAGCAAGTGAGGGAACTTCGTCATATTGACTGGGAAAAGGTTAAAAATGACAACGGCAATAATGAAGGGCAGACAGTGGATATTACAGTATATGAATATTTTGTCGAACATTGTCACATTGATCTGATCTCATCTGCTTATCTTCCATGTCTTGATGTTGGAAAACCTAAACGGCCCATCTATTTTCCTTTGGAGCTATGTTCACTGGTTTCCCTCCAACGGTATACAAAGGTACTATCTCCAATGGAAAGAGCATCTTTAGCTGAAAAATCACGCCAGAAGCCTAAAGATAGAATCGAAATTCTGAAAAATGCTGTAGGAAATTATTGCTTCGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGAGAAACAATTGACTCTGGTTAAAGGTCGTGTCCTTGAGACACCAAAGACACTTCTACAACCATCGCGTATTGAAGTTTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACATATCAAGAGAGCTGATCAGATGTGGAATGGGCAAGGGCATTAACATTGCACGGCCATATACTTTGATGGAGGAGGAACCACATATGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGATTGGCCTGCTTGCACCAAAACTACCAAGAACACCAGATTTGATTCTTTGCGTCTTGCCAGAGAGGAAAAATTGGCCATGGAAAAGGAAGTGTCTGAGTGAAATTGGTGTTGTCACACAGTGCATTTCCCCTGTCAAGATCACTGATCAATACCTTAATAATGTACTTCTTAAAATCAATTCTAAGCTTGGGGGAATAAATTCTCTGTTGGCAATAGAGCGTTCTGGGCATTTTCCCCAAATTGAAGATATCCCAACAATGATTTTGGGGATGGATGTCTCCCACAGAACGCTTGATCGAGTAGATATTCCATCAATAGCAGCTGTTGTCGGATCTCAATGTTGGCCACTGATTTCAAGGTATAGAGCTTCCGTGAGAATGCAAACATCTAAGGTGGAGATGATTGATGCTCTATTTAAGCCGGTGGGAGATGAGGGTGATGCTGGTATGATCAGGGAATTGCTTTTAGATTTCTATCATACAAGTAAGGGACGCAAGCCAACTCAATTTATTATCTTCAGGGATGGAGTTAGTGAATCACAATTTAAACAAGTCTTGACTGTCGAGCTTAACCAGATAATCAAGGCCTATCAACGTCTTGGTGAGGGTAATGTTCCCAAGTTCACCGTGATTGTGGCACAGAAAAATCATCATACTAGGCTGTTTCAGGCTGATGGTCTGGCAAATGTTCCTCCTGGGACTGTTGTGGACACAACAATCACGCATCGAAGCAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATTGGAACATCTAGGCCTGTACATTATCATGTGCTTCTTGATGAGATTGGCTTCTCGGCAGATGACTTACAAAATTTGATCCATTCGCTGTCCTATGTGTACGCACTCTACCTTTTGAACCAAAGAAGCACAACGGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCTGCATTTCTGATGGGACAACTTTGGAATCTTGATGATTTATCAGAAACGGGTTTACCCATGCCAGAGCTCCCAAAGGTGCATAAGGATGTCGAGCGTTCTATGTTCTTCTGTTGA 2460 0.4175 MAEEVPGIEEAAEPPASPKPSTVVAHNMETEQMTPTKYSIISRNGVGTTGKHISLLVNLFKVSVNAPDTVFFQYNVAITLEDKRAVDSKGIGRKVIDRLYQAYASELGGKRFAYDGKKTLYTVDNLPRNEFKVSLEEPFAKRSTECPGADGSLLEETKRSKCYSQSKIFMVEISFAAKIPLQSIAIALKEAESDANSEDALRVLDTVLRQRAANCDVGAGLTAVSGFHSSFRPTQRGLALNMDVSTTMIIKPGPVIDFLLSNQQVRELRHIDWEKVKNDNGNNEGQTVDITVYEYFVEHCHIDLISSAYLPCLDVGKPKRPIYFPLELCSLVSLQRYTKVLSPMERASLAEKSRQKPKDRIEILKNAVGNYCFDDDPVLAACGISVEKQLTLVKGRVLETPKTLLQPSRIEVWAVVNFSARCDTSYISRELIRCGMGKGINIARPYTLMEEEPHMRKSNPVARVERMIGLLAPKLPRTPDLILCVLPERKNWPWKRKCLSEIGVVTQCISPVKITDQYLNNVLLKINSKLGGINSLLAIERSGHFPQIEDIPTMILGMDVSHRTLDRVDIPSIAAVVGSQCWPLISRYRASVRMQTSKVEMIDALFKPVGDEGDAGMIRELLLDFYHTSKGRKPTQFIIFRDGVSESQFKQVLTVELNQIIKAYQRLGEGNVPKFTVIVAQKNHHTRLFQADGLANVPPGTVVDTTITHRSNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSADDLQNLIHSLSYVYALYLLNQRSTTATSVVAPICYAHHAAFLMGQLWNLDDLSETGLPMPELPKVHKDVERSMFFC 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00488 819 ProSiteProfiles Piwi domain profile. 495 791 IPR003165 GO:0003676
Spst11g00488 819 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 35 789 - -
Spst11g00488 819 SMART Piwi_a_2 481 791 IPR003165 GO:0003676
Spst11g00488 819 MobiDBLite consensus disorder prediction 1 22 - -
Spst11g00488 819 Pfam Argonaute linker 2 domain 362 402 IPR032472 -
Spst11g00488 819 Gene3D - 401 537 - -
Spst11g00488 819 Pfam Argonaute linker 1 domain 216 251 IPR014811 -
Spst11g00488 819 CDD Piwi_ago-like 377 784 IPR045246 -
Spst11g00488 819 CDD PAZ_argonaute_like 252 332 - -
Spst11g00488 819 SUPERFAMILY PAZ domain 247 371 IPR036085 GO:0005515
Spst11g00488 819 Gene3D - 545 819 IPR036397 GO:0003676
Spst11g00488 819 SUPERFAMILY Ribonuclease H-like 468 791 IPR012337 -
Spst11g00488 819 Pfam N-terminal domain of argonaute 51 208 IPR032474 -
Spst11g00488 819 Pfam Piwi domain 481 791 IPR003165 GO:0003676
Spst11g00488 819 SMART DUF1785_2 201 252 IPR014811 -
Spst11g00488 819 Pfam PAZ domain 282 348 IPR003100 GO:0005515
Spst11g00488 819 FunFam Protein argonaute 3 545 819 - -
Spst11g00488 819 Gene3D paz domain 258 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00488 Spst-Chr11 26684216 26692839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00488 23 819 Eukaryotic Initiation Factors Gene Family AT5G43810 32.715 1.36e-123 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00488 K11593 - gmx:100778875 1222.61