Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00463 ATGGCTGTTGAAGCTCGTCACCTTAACCTCTTCCCTCCCCAACAACTCATGCCCAATAGAGAAATCATGAGCAACCCAATGGACGCGACCATCATGAACATCTACGCCACCCAAACGGGTAATTACTCCATGCTGCCTCTCTCTGGCACCACCACCGCGTCGGAAACTTTTCTCCCGGCGCCGCCGCCGCCTCACTACAACTCCCTCCCCCAGAAAACCGCTGTCTTGAAATCCGACAACAGTACTCTCTCCTACACCAACGTTGTTCCCGTTCCCAGAAAACGCTCCAGAGATTCGATCCATGACAACAATTTGCAATTCCATTCCTACCCTCAGAAGAAAACCGATTCTTTCTCCTTCCTCGGCGAAGACATTTCCTTTCACATCCATCGCCAACAACACGACCTCGATACCCTCGTCTCCCAACACATGGAGAAAGTGAGGATGGAATTAGAAGAGAAAAGAAAAGGGCAAGCGAGAAGATTGATGGGAACCATCGAGTGGGAAATGGCGATGAGGTTGAGAGCGAAGGAAGAAGAGGTATTGAAGATTGAAAAATTGAATTGGGTGTTGGAAGAGAAAGTGAGGTCTCTGTGCATCGAGAATCAGATATGGCGCGACCTTGCTCAGACCAACGAGGCCACAGCCAATGCCCTCCGCAACAATCTGGAGCAGGTGCTGGCGCAGGCCGCATCCGACAGAAGAGACGGCGAGGCAGCACCGGCCACGGCGGAGGAAGATGCAGAGTCGTGCTGCGGGAGCAGTGACGAGGGATGGCGCACGGTAGGTACGGGGGCGCAGGATAAGGAAGGAGAAGGTTGCAGCGGAACAAAAGAAAATATCATTATTATCAATAATAACAACAATGAGAATGAGGATGGAAGAAGCGGTGAGAGAAGATTGTGCAGAAAGTGTGGGAAGGAGGAATCGTGCGTGCTAATCTTACCTTGCAGACACCTATGTGTCTGCACGGTTTGCGGGTCTAGCCTAGACTCTTGTCCTGTTTGTAAATCCTTCAAAAATGCCAGTGTTCATGTAAACATGACATCATAA 1053 0.5052 MAVEARHLNLFPPQQLMPNREIMSNPMDATIMNIYATQTGNYSMLPLSGTTTASETFLPAPPPPHYNSLPQKTAVLKSDNSTLSYTNVVPVPRKRSRDSIHDNNLQFHSYPQKKTDSFSFLGEDISFHIHRQQHDLDTLVSQHMEKVRMELEEKRKGQARRLMGTIEWEMAMRLRAKEEEVLKIEKLNWVLEEKVRSLCIENQIWRDLAQTNEATANALRNNLEQVLAQAASDRRDGEAAPATAEEDAESCCGSSDEGWRTVGTGAQDKEGEGCSGTKENIIIINNNNNENEDGRSGERRLCRKCGKEESCVLILPCRHLCVCTVCGSSLDSCPVCKSFKNASVHVNMTS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00463 350 CDD mRING-HC-C3HC5_CGRF1-like 300 337 - -
Spst11g00463 350 MobiDBLite consensus disorder prediction 230 256 - -
Spst11g00463 350 Pfam Zinc finger, C3HC4 type (RING finger) 299 338 - -
Spst11g00463 350 Coils Coil 209 236 - -
Spst11g00463 350 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 80 346 IPR017066 -
Spst11g00463 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 348 IPR013083 -
Spst11g00463 350 FunFam BOI-related E3 ubiquitin-protein ligase 1 278 349 - -
Spst11g00463 350 ProSiteProfiles Zinc finger RING-type profile. 302 337 IPR001841 -
Spst11g00463 350 PIRSF SBP1_RNase_bind 1 349 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00463 Spst-Chr11 25527478 25529020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00463 301 338 Miscellaneous Gene Families AT4G39050 34.211 5.09e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00463 K19042 - qsu:112024867 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00463 11 25527478 25529020 Spst11g00463 11 25527478 25529020 ECH
Spst5g01657 5 51474889 51476099 Spst11g00463 11 25527478 25529020 PCT