Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00458 GGTGCAGGGCAGGCAGTGGCACTCAGAGTAACAGCAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGGGTGGCAGGGAGTGTGGACTTCATTTTTGGTAATAGTACTTGCACTTGTTGGAACATTGTCACATCCATTGCAAGTCCGCGAGGTTTATAACTGCACGGAGCGAAACTCTCCACGGGAAAAAACTGGTTATGTATTCCTGAGATGTGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTGGGAAGACCATGGGGACCTTTTGCAAGAGTGGTTTTTGCATTCACTTTCATGGATCAATGTATAAAGCCTGCAGGGTGGAATAATTGGGGCAAAGTGTTCTGGATCGGGTTTCTGTCCATCCCAAAGAGTGAAATGGGCAGAGAATTGAAGAATGAAGGAGCTGAGTAG 423 0.461 GAGQAVALRVTADRCAFYNCRFLGWQGVWTSFLVIVLALVGTLSHPLQVREVYNCTERNSPREKTGYVFLRCVVTGNGGTSYAYLGRPWGPFARVVFAFTFMDQCIKPAGWNNWGKVFWIGFLSIPKSEMGRELKNEGAE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00458 140 Gene3D - 1 30 IPR012334 -
Spst11g00458 140 Pfam Pectinesterase 55 118 IPR000070 GO:0030599|GO:0042545
Spst11g00458 140 SUPERFAMILY Pectin lyase-like 3 118 IPR011050 -
Spst11g00458 140 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 56 117 - -
Spst11g00458 140 Gene3D - 42 132 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00458 Spst-Chr11 25403248 25404853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00458 4 114 Carbohydrate Esterase AT3G05610 32.857 7.74e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00458 K01051 - gmx:100810259 168.318