Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00448 ATGTCGGTGTTGATCGTGACGAGCTTAGGGGACTTAGTCGTCGATTTGCACACTAACAAATGCCCGTTAACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAAAGGATTTTACTGCTCAAACTGGCGATCCAACTGGCATGGGAACTGGCGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCACGGTTTTTCAGCGATGAAATTCATATGGATCTTAAGCATACCAAAACTGGAACAGTTGCCATGGCAAGTGCTGGGAAGAATTTAAATGCTTCACAGTTCTATATCACACTGCGGGATGACCTTGATTACCTCGACGGCAAGCACACAACACTTCCTTTCGATGATGGTCAGGAAGAGAGCAATTCCAAGACAACTCCCAAGGATAATTCTTCTCCCCCAATAATGAAAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGACAAGGGAAGACCATATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGATGATCCTTCCCAGCTATCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTACGACTAGAAGATGATTGGGTACCCATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCTGACAATGTATTGTTTGTCTGTAAATTGAACCCGGTTACTGAGGATGACGACTTGAATACTATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGCTTATGCTATGCCTTCATAGAATTTGAGGACAAACGGTCGTGTGAGCAAGCTTATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCTCAATACAGGCGGAAAGATCAAAAGGGTAAAGATGGTGGCTGCTTCAAATGTGGCGCTACAGATCACATTGCCAAGGACTGCACTGGAGAGGCTACAATGAAACAACCACAAACAAAATACATCTTAAAGGATGATAATACCCAGCGTGGTGCAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACCCAGAAAGTCCAAGGCAAGATATAAAACACCAAAGGCATGACAGGGATGACCCAGTTGATAGGAAAGGTAGGAGTGATAATTTTAAAGATCATAGAAATAGTAGGGATCAGGATAGGGGAGACTCGAATAGAGATAGGTATGGTGATAGGAGCAGAGGGCATTGGGGAAATAGAGACGACAAAGCACGGTCTGAAAGAGGTGCAAGAGATTCGGATTCCCATGCTGACAAGAAAGACAGAGATAGGCACATGGGAAGACATGGAGATGATGATTTCAGGCGGAAAGATGACCGTGATTCTAGAAGAAGAGACGAAGATGATAGCTACAAGCGGAAAGATGAGCGGGACTCAAGAAGAAGAGATGAAGATGATAGCTACAGAGAAAGACGAAGTACTCGAGATGATAGGAGAAACACAGATTGTAGCCATTTGGAGAGAAGGAATGACAGGGATTATAGGAAGAGAAGTGAAGACAGTGGAAAGCAAGATGTGAAGATTGATTCTGGGCGGAGAAAAAGAAGTCCAGGTGAGGAGGATTACAAAAATGGAAGGAATGATGAAGATTACAGACACAGAAAGGAAGAACGGGGGTACAAAAGACAAGATATTGAAGCTGATGAGTATTACAAACGTAGAAGGGAGGAACGTGGACATAAAAGACTGGATATTGAAGCTGATGACTATCCCCACCGGAGGCATCATGGTGACAGGAGATGA 1971 0.4206 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGMGTGGDSVYKFLYGDQARFFSDEIHMDLKHTKTGTVAMASAGKNLNASQFYITLRDDLDYLDGKHTTLPFDDGQEESNSKTTPKDNSSPPIMKVFGEVAEGFETLTRINEAYVDDKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDDDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKDGGCFKCGATDHIAKDCTGEATMKQPQTKYILKDDNTQRGADNARYEMVFDGDNPESPRQDIKHQRHDRDDPVDRKGRSDNFKDHRNSRDQDRGDSNRDRYGDRSRGHWGNRDDKARSERGARDSDSHADKKDRDRHMGRHGDDDFRRKDDRDSRRRDEDDSYKRKDERDSRRRDEDDSYRERRSTRDDRRNTDCSHLERRNDRDYRKRSEDSGKQDVKIDSGRRKRSPGEEDYKNGRNDEDYRHRKEERGYKRQDIEADEYYKRRREERGHKRLDIEADDYPHRRHHGDRR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00448 656 SUPERFAMILY Retrovirus zinc finger-like domains 356 383 IPR036875 GO:0003676|GO:0008270
Spst11g00448 656 MobiDBLite consensus disorder prediction 125 148 - -
Spst11g00448 656 MobiDBLite consensus disorder prediction 130 146 - -
Spst11g00448 656 SUPERFAMILY RNA-binding domain, RBD 256 360 IPR035979 GO:0003676
Spst11g00448 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Spst11g00448 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Spst11g00448 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Spst11g00448 656 MobiDBLite consensus disorder prediction 416 656 - -
Spst11g00448 656 CDD cyclophilin_RRM 4 196 IPR035538 -
Spst11g00448 656 SUPERFAMILY Cyclophilin-like 3 188 IPR029000 -
Spst11g00448 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 342 IPR000504 GO:0003723
Spst11g00448 656 CDD RRM_PPIL4 267 349 - -
Spst11g00448 656 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 186 IPR002130 GO:0000413|GO:0003755
Spst11g00448 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 348 IPR000504 GO:0003723
Spst11g00448 656 SMART rrm1_1 271 344 IPR000504 GO:0003723
Spst11g00448 656 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 188 IPR002130 GO:0000413|GO:0003755
Spst11g00448 656 ProSiteProfiles Zinc finger CCHC-type profile. 368 381 IPR001878 GO:0003676|GO:0008270
Spst11g00448 656 FunFam Peptidyl-prolyl cis-trans isomerase 209 350 - -
Spst11g00448 656 Gene3D - 1 200 IPR029000 -
Spst11g00448 656 Pfam Zinc knuckle 367 382 IPR001878 GO:0003676|GO:0008270
Spst11g00448 656 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 551 IPR035542 -
Spst11g00448 656 Gene3D - 256 382 IPR012677 -
Spst11g00448 656 SMART c2hcfinal6 367 383 IPR001878 GO:0003676|GO:0008270
Spst11g00448 656 MobiDBLite consensus disorder prediction 412 656 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00448 7 193 U-box Gene Family AT5G67530 33.690 6.95e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00448 K12735 - gmx:100776900 1006.51