Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00439 ATGAGTGAAGAACACAGAAGTGTTGCATGTGTCTTGTGTAGGTATCAACATACACGTCACGATGGAAGATGTGAACTTGGTCAGTATTTTCCCATTAATAGGTCAGTGGACTTTGAGAAAGCTTGCAGGCTTTTTGGGTTGGCCAACTTGCTTAGATTGATGCGTTCTGCTGAACCATCTGAAAGACAAGTTATGGCTGATTCCATTTTGACAGAGGCTATCATGTGGGATAATGATCCCATTCATGGTGCCTTAGGTCATGCCTTTACTTTGAACGCTCAAATCCAATCTGTTGAAAGGGAACTAGAACTTGTAAACACCATTCTTGCTCAATGCTCAAATCAAGCAACTGGGCATGGAAACCATGGATCAAAACGAAATAATGAAACTGGTGCATCAACCTCTCAAATTTCAAACACTGGTCTTGATGTTGCTGCTACTTCTTCTGAACCAGTTCAGTCAAGATCTGATGAGAAAGAGGGTGCTGCACATGATGAGGTTCAAGAGAAAGAATGA 516 0.4167 MSEEHRSVACVLCRYQHTRHDGRCELGQYFPINRSVDFEKACRLFGLANLLRLMRSAEPSERQVMADSILTEAIMWDNDPIHGALGHAFTLNAQIQSVERELELVNTILAQCSNQATGHGNHGSKRNNETGASTSQISNTGLDVAATSSEPVQSRSDEKEGAAHDEVQEKE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00439 171 Coils Coil 95 115 - -
Spst11g00439 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 147 - -
Spst11g00439 171 MobiDBLite consensus disorder prediction 116 152 - -
Spst11g00439 171 MobiDBLite consensus disorder prediction 153 171 - -
Spst11g00439 171 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Spst11g00439 171 MobiDBLite consensus disorder prediction 116 171 - -
Spst11g00439 171 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00439 Spst-Chr11 25095146 25095885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00439 6 96 AS2 family AT2G19820 34.783 2.25e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst11g00439 LOB 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00439 - - pvu:PHAVU_011G178700g 173.711