Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00429 ATGGGAAACTCGCATGCTAAAAAGCGTGACACTCCCTCACCGGTGGTAACCAGAAACTTGTCACCATCACCACGACCGTCCTCGCCACCTGAATCATCTAGAAGACCACCGCGAGAACCACCACCTGTGTCCTTTAAGAAGCAACACCATGGTTCGGGGAAACTATCTGTGAAAGAGAAATACGCTCTGATTCCCGATAACTTCACTTCGCTTAAACAGGTTACAACTGCGTTGAGGAACGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAGTTGATTTTACCAAAAGCAATGAATGGACTGGAAGTATCTCATTCAACAATAAAAGCCTACATGCTATTGGAAATACACCTAACCCCTATGAGAAAGCCATCACTATTATTGGCAAGACTCTGGCTCCCTTTGATGATGACAACTTGATTCCTTGCTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAAGTTTTTAGCTTTCACAGTGACCATTCATCTTGCCATGGTTTTGAGGAAGTTTTGACTTGCTATCAAAAAATTGTTCCGAACTTAAGACTTTCAGGACCAACTTCATACGCTCCCGTGATTGAGGCTGCAATAGACATAGTTGAGCAAAGTCATGGCCAATTCCATGCGTTAGTTATTGTTGCAGATGGCCAGGTTACAACTAGTGCTGCCTCTGAAGATGGAGAACTAAGTCCACAGGAAGCAAGGACCATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTCTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAGAAGTTTGATGACAAGATACCAGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGTCTAAGAAATCAAGCTCGTCTGAAAAAGAAGCTGCTTTTGCTCTGGCTGCACTAATGGAGATACCGTTTCAATATAAAGCAGCCATCGAACTAGGGCTGCTTGGTCGAGTAACAGGAAGGTCAAATAAAATTGTTCCAAGACCTCCTCCAGTTCCATATTCTAGGCTTGTGCCTCCAGCTCGTGCTCTCAGCAATATGCCAACTTTCATGGATGATGAGAGAAATCAAATGGCATGTGCTATTTGTCTGACCAGTAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACTTGTAGAGACTGTGGATCCAGGGATGGTTTAGGTGTTAAGAAAATTGTGCATGAATGTATGCCTGCTTATGGGGCATCATTGGACCTAAATGGGCTTCTTGGGATGCTTGGTTTGGGAGAAAAGGGAGCATCCATTTCTGAAGATACCACAAAAACTTGGCTTCAGATACTGTTGCTGACACTTGCGATTGGAATCTGGTTTCTGTTGTATCAGTTGGCAGAGGACAGAGAAAGCAATGACAACGTCAAAGAGGTTGATGAGTTGGGGGAGATGGATCACCCCAATCATGAATTCGACCATTTTTTTGAGCCCCATCAGAGAGAGCAGGAGCACCCCAATGGTGAGCTGGACCATTATTTTCATGAGGAAGATCGTCACCGGGCCACCGCGCCCGGTGGCAATGATGGGAGGATACACGGTGGTTGTGCCCTCTGTGGAAATTTCAGCACCACAAGGTGCTCTCGCTGCAAGGCTGCTAGATATTGCTCAATGAAATGCCAAATTATAGATTGGAGATGGAGGCATAAATATGAATGTTGTGAATCAGAGATTGCAGCAGATGAAGGAACCTCAAAGCTTCTCCACAATTCTGAAATAGAGAGTGCCTCTAATGCGTCCCATGTTGATGATGGAGTGGCGTGGAGTTCAGAATCAGACAGGGGAGTGGAAGCATCCAGTGGAAATGATGTTAACAATTTCCATGGTTGTGAAGTATGTGGTTGCCCAAGTACCACAAGATGTTCACGCTGCAAAGCTGTCAAATACTGCTCAGTAAAGTGCTTAATTATGGACTGGAAATGGCATAAAGAGCAATGCATTACAAGTGTGGATTCAGCTCCAATAGAAAGATCCTACACAGATGTTGGAATGCTCAAGAATTCATTGGAAGAGGAAGATAATATTCATTCTTCTGGTCCCCTTTCTTTGGAGTTTCATCCAGCTGGAAGAACAAGATCCAAGTCTCCAATTAAAGTTTCACAGGTACTATTGACATAG 2154 0.4401 MGNSHAKKRDTPSPVVTRNLSPSPRPSSPPESSRRPPREPPPVSFKKQHHGSGKLSVKEKYALIPDNFTSLKQVTTALRNEGLESSNLVLGVDFTKSNEWTGSISFNNKSLHAIGNTPNPYEKAITIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSSCHGFEEVLTCYQKIVPNLRLSGPTSYAPVIEAAIDIVEQSHGQFHALVIVADGQVTTSAASEDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTDIMSKKSSSSEKEAAFALAALMEIPFQYKAAIELGLLGRVTGRSNKIVPRPPPVPYSRLVPPARALSNMPTFMDDERNQMACAICLTSRKDLAFGCGHMTCRDCGSRDGLGVKKIVHECMPAYGASLDLNGLLGMLGLGEKGASISEDTTKTWLQILLLTLAIGIWFLLYQLAEDRESNDNVKEVDELGEMDHPNHEFDHFFEPHQREQEHPNGELDHYFHEEDRHRATAPGGNDGRIHGGCALCGNFSTTRCSRCKAARYCSMKCQIIDWRWRHKYECCESEIAADEGTSKLLHNSEIESASNASHVDDGVAWSSESDRGVEASSGNDVNNFHGCEVCGCPSTTRCSRCKAVKYCSVKCLIMDWKWHKEQCITSVDSAPIERSYTDVGMLKNSLEEEDNIHSSGPLSLEFHPAGRTRSKSPIKVSQVLLT 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00429 717 MobiDBLite consensus disorder prediction 23 39 - -
Spst11g00429 717 SUPERFAMILY HIT/MYND zinc finger-like 525 566 - -
Spst11g00429 717 ProSiteProfiles Zinc finger MYND-type profile. 528 565 IPR002893 -
Spst11g00429 717 ProSiteProfiles Zinc finger MYND-type profile. 622 658 IPR002893 -
Spst11g00429 717 Pfam Copine 110 323 IPR010734 -
Spst11g00429 717 SUPERFAMILY HIT/MYND zinc finger-like 619 660 - -
Spst11g00429 717 SUPERFAMILY vWA-like 86 268 IPR036465 -
Spst11g00429 717 SMART VWA_4 85 288 IPR002035 -
Spst11g00429 717 PANTHER COPINE FAMILY PROTEIN 1 54 385 - -
Spst11g00429 717 Pfam MYND finger 622 658 IPR002893 -
Spst11g00429 717 Pfam MYND finger 528 565 IPR002893 -
Spst11g00429 717 Gene3D - 609 663 - -
Spst11g00429 717 Gene3D - 519 570 - -
Spst11g00429 717 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00429 Spst-Chr11 24992424 25005242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00429 591 658 Miscellaneous Gene Families AT4G31670 40.580 1.45e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00429 K16280 - gmx:100795579 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00429 11 24992424 25005242 Spst11g00429 11 24992424 25005242 ECH
Spst5g01734 5 52991786 52997848 Spst11g00429 11 24992424 25005242 PCT