Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00423 ATGTGCATGTGCAATTGTGAGGCAAAGGCAAGGATGTGTGGTGTCAAATTGCTTTTTGGTTTTAGTCCATGTGAGCAATTAGGCTTTGTGTTATCTATTATTCCCTTTAACAGGTTGTGTGAGATATTTGCATTGGGGAGTGTTGGACCACATTCCTCTTCTTTTTCTCTTTATGGGGTTGTTATCTTTCTTCTACTCTCCAACCTTTTGGCTTTGGTGAATATCAATCATAGTCTAGAAGAGACTCTCAAGATGAATCAGTCTTATACAAATTCACCAAATAATTTAGAAAATTATCATGTTCAAAAAGTAAATCATTATACCAATCATGCCTCCATAAGTGACTACACAACCAGTGGAGAAAGAGAAAAAGACCAAGTTTCTAAAAATAATGCAAAGGTGACAGGTAAACCAAGATCTAAACCTCACTTGTTAAGAAATCTTAAGAACATATCTGAATATTCCATTGATTCTCAAAAGCCAAGTCCAAGTGCAAGAATACCTTCAAATCATAACCCTTCAACCAACTCACCAGGAGTAATACCAATACCAGAAACTACAAGAGAGTTTCCTATACCTACACGAAACACCAACCAAGGTAAAAGAAGTGGTTGTAGCTCTCGTAGTGATAGTTTAGAGAGCATTACTAGTGTAAATATTAAGCCACATACTGGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCTAAGGGTGATGGTCTTAATCTTAGTCATTTCAGGCTTCTTAAGCGTGTTGGATATGGTGATATTGGAAATGTGTACCTTGTGGAACTTAAAGGAACTAAGGCATTCTTTGCCATGAAAGTAATGGACAAAGCATCACTTGCTAGTAGAAACAAGCTTTTGAGAGCACAAACAGAAAGAGAGATTCTTGGACTTCTCGACCACCCATTTTTACCAACTTTATATTCTTATTTTGAGACTGATAAATACTATTGTTTGGTCATGGAGTTTTGTAGTAGTGGTAGTTTGCATTCTCTTCGACTCAAGCAACCTAACAAGCATTTCACTGAAGAAGCTACACGGTTTTATTGTTCAGAAATTTTGTTAGCCTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATGAAGGTCACATAATGTTATCAGATTTTGACTTATCTCTCAGATGTTCTGTCTATCCTACACTTGTGAAGTCATCATCTGCACATGAAAGTAGTAATGGTCCTTCTGGGGGTATTTTGAATGATGAGCAAGCAATACATAGTTGCAAACAAGCCTCAAGTTTCTTTCCACGCATTTTGCCAAAAAAGAATCGCAAGTCAAAGTCAGATTTTGGCCTCATGGATGGAGAATGTCTCCCTGAACTAATGGCAGAACCTACAAATGTGAGGTCTATGTCCTTTGTAGGAACACATGAGTATCTTGCACCAGAGATTATTCGTGGTGAAGGACATGGTAGTGCTGTTGATTGGTGGACCTTTGGGATCTTCTTATACGAGCTTTTGCATGGGATAACACCCTTTAAAGGTGCAGGAAATAAAGCTACACTCTTTAATGTTGTAGGGCAACCCTTAAGGTTTCCAGAAAAACCCATTGTCAGCAAAGTTGCAAGAGACCTTATACAAGGATTGTTGGTGAAAGAGCCTCAGAAACGATATGCTTACAAGAGAGGTGCAACAGAAATAAAACAACATCCTTTTTTTAATGGAGTGAATTGGGCTCTAGTTAGAAGTGCTACACCTCCAATCATACCAGAACCTTTAGATTTTTCTATGTATGCTAGAAAAGCAAAGGTTCTCCCCATGGATAAGAAGATTGCAGATATTGTTGCAAGTGATAAAAGTAAGCGTATACAACCAGATTCATCTTATGAATATTTTGAATATTTTTAG 1914 0.3757 MCMCNCEAKARMCGVKLLFGFSPCEQLGFVLSIIPFNRLCEIFALGSVGPHSSSFSLYGVVIFLLLSNLLALVNINHSLEETLKMNQSYTNSPNNLENYHVQKVNHYTNHASISDYTTSGEREKDQVSKNNAKVTGKPRSKPHLLRNLKNISEYSIDSQKPSPSARIPSNHNPSTNSPGVIPIPETTREFPIPTRNTNQGKRSGCSSRSDSLESITSVNIKPHTGGDVRWDAINMVSKGDGLNLSHFRLLKRVGYGDIGNVYLVELKGTKAFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFCSSGSLHSLRLKQPNKHFTEEATRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVYPTLVKSSSAHESSNGPSGGILNDEQAIHSCKQASSFFPRILPKKNRKSKSDFGLMDGECLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNKATLFNVVGQPLRFPEKPIVSKVARDLIQGLLVKEPQKRYAYKRGATEIKQHPFFNGVNWALVRSATPPIIPEPLDFSMYARKAKVLPMDKKIADIVASDKSKRIQPDSSYEYFEYF 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00423 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Spst11g00423 637 SMART serkin_6 247 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00423 637 Pfam Protein kinase domain 248 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00423 637 Pfam Protein kinase domain 469 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00423 637 Gene3D Transferase(Phosphotransferase) domain 1 331 398 - -
Spst11g00423 637 Gene3D Phosphorylase Kinase; domain 1 245 330 - -
Spst11g00423 637 SUPERFAMILY Protein kinase-like (PK-like) 244 602 IPR011009 -
Spst11g00423 637 CDD STKc_phototropin_like 245 596 - -
Spst11g00423 637 MobiDBLite consensus disorder prediction 190 210 - -
Spst11g00423 637 FunFam Serine/threonine-protein kinase AGC1-7 468 593 - -
Spst11g00423 637 FunFam Serine/threonine-protein kinase D6PK-like 245 330 - -
Spst11g00423 637 PANTHER FLIPPASE KINASE 1-RELATED 102 598 - -
Spst11g00423 637 MobiDBLite consensus disorder prediction 151 182 - -
Spst11g00423 637 FunFam serine/threonine-protein kinase D6PK-like 331 398 - -
Spst11g00423 637 ProSiteProfiles Protein kinase domain profile. 247 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00423 637 Gene3D Transferase(Phosphotransferase) domain 1 451 593 - -
Spst11g00423 637 MobiDBLite consensus disorder prediction 115 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00423 Spst-Chr11 24852572 24856582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00423 126 605 AGC Kinase Gene Family AT1G79250 67.418 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Spst11g00423 Pkinase 5.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00423 - - gmx:100802478 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00423 11 24852572 24856582 Spst11g00423 11 24852572 24856582 ECH
Spst5g01762 5 53396503 53399215 Spst11g00423 11 24852572 24856582 PCT