Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00408 ATGGATAATGGGCAATGGTTAAGGAAGGGTATTATAGTCATAGCCCGTTCCAAAACCCTAGCTTCTCCCACCCTCATATTTACCTGTTTTTTACTCCCGTTCCCACCACCATTGCTTATTGCTGCTGCTGCAATTCTCTCCCTTCTCTTCAGATTCCAGATTCCATTAGCAATGGCTTCCGAGAAGAAACTATCGAATCCCATGCGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCTGTCGGTGAGAGTGGCGATCGTCTCACCAGAGCCGCAAAGGTGTTGGAGCAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGATACACTGTCCGATCTTTTGGTATCAGAAGAAATGAAAAGATTGCGTGCTATGTAACTGTTAGAGGTGACAAGGCAATGCAGCTTCTGGAGAGTGGATTAAAGGTGAAGGAATATGAACTTCTGCGAAGAAACTTCAGTGATACCGGGTGCTTTGGTTTTGGTATTCAGGAGCATATTGACTTGGGAATCAAGTACGATCCCTCAACTGGTATTTATGGAATGGACTTTTTTGTCATTTTGGAGCGCCCTGGTTATCGTGTTGGCCGCCGCCGTCGTTGCAAGTCTCGTGTTGGGATCCAACATCGAGTTACCAAGGAAGATGCTATGAAGTGGTTCCAGGTGAAATACGAAGGTGTGATCCTCAACAAGTCACAGGCAATTGTTTAA 717 0.4603 MDNGQWLRKGIIVIARSKTLASPTLIFTCFLLPFPPPLLIAAAAILSLLFRFQIPLAMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVILERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00408 238 Pfam Ribosomal protein L5 66 119 IPR031310 -
Spst11g00408 238 SUPERFAMILY RL5-like 65 230 IPR022803 -
Spst11g00408 238 Gene3D - 58 234 IPR022803 -
Spst11g00408 238 FunFam 60S ribosomal protein L11 58 231 - -
Spst11g00408 238 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 57 233 IPR002132 GO:0003735|GO:0005840|GO:0006412
Spst11g00408 238 Pfam ribosomal L5P family C-terminus 123 221 IPR031309 -
Spst11g00408 238 ProSitePatterns Ribosomal protein L5 signature. 96 112 IPR020929 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00408 Spst-Chr11 24566644 24569977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00408 58 238 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.475 2.08e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00408 K02868 - gmx:100810082 342.043