Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00401 ATGAACCAAATCACTCCAAAGATTTCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCGTAGTTTGGTGTCCATGACAGCTGCTAGAGGAACCTTGGGATACATTGCACCTGAAGTTTTCTCCAGGAACTTCGGAAATGTGTCCTATAAGTCTGATATTTACAGTTACGGAATGTTGCTGTTAGAAATGGTTGGAGGAAGGAAGAATGTAGACATGTCATCCACACAAAATTTCCATGTTCTGTACCCAGATTGGATCCATAACCTGGTTGATGGAGACATACACATCAATGTTGAGGATGAAGGTGACGCTAAAATTGCGAAGAAGCTAGCCATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACCGTCCATCCATAAAATCTGTCATACAAATGCTAGAAACTAAAGAGGAAAACCAATTAACTGTGCCTCCTAACCCATTTCACTCAACAACTTCCACTACTGTCAGGGGACTTATTTCAGGAAGAAGACCTTTGGAGTTGGAAGCAATTCAAGA 527 0.4156 MNQITPKISDFGLAKLCSKNRSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSTQNFHVLYPDWIHNLVDGDIHINVEDEGDAKIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLETKEENQLTVPPNPFHSTTSTTVRGLISGRRPLELEAIQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00401 175 Gene3D Transferase(Phosphotransferase) domain 1 1 150 - -
Spst11g00401 175 ProSiteProfiles Protein kinase domain profile. 1 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00401 175 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 154 IPR045874 GO:0004672
Spst11g00401 175 Pfam Protein kinase domain 5 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00401 175 SUPERFAMILY Protein kinase-like (PK-like) 4 157 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00401 Spst-Chr11 24308533 24309059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00401 4 151 Receptor kinase-like Gene Family AT4G18250 48.718 4.46e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst11g00401 Pkinase 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00401 - - pvu:PHAVU_L001000g 307.375