Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00348 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCTTTTGCACCATATTTTCCTCCTGATCAGCCTCAAAAGTTTGCAAATGTTCATAGAATTTTTGGGGCCAGCAATGTCACAAAGCTTCTCAACGATTTGCACCCTCATCAACGTGAAGATGCTGTGAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGACCCTGTGTATGGCTGTGTAGGAGTGATATCACTCCTCCAGCACCAACTTCGCCAGCTTCAAATGGACCTCTATTGTGCCAAATCCGAGCTCTCTAGGTACCAAAACCTTAGCATCACCACCAACCACAGTCTCATAGCCTCCGAACCAGCCACTCCCTACCACCACCACCACCAGAACAACAGTGGTAATGGTTTTGGTCGAGATAATCATTACCATTATCACCACCATCAGTTTTTTCCCAGAGACCAACACCAACAAGTAGTGAGAAACTTTGATGCAGGCAACAACTATGATGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTACTGCTGGTGGAGGTGATGACCGCCACACTGCCAACCGCTCCTAG 636 0.4811 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSITTNHSLIASEPATPYHHHHQNNSGNGFGRDNHYHYHHHQFFPRDQHQQVVRNFDAGNNYDASLLAMNISASLGQLNQLQHQSTAGGGDDRHTANRS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00348 211 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Spst11g00348 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 146 - -
Spst11g00348 211 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00348 Spst-Chr11 17930545 17931180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00348 2 211 AS2 family AT1G65620 64.151 1.10e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst11g00348 LOB 2.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00348 - - gmx:100819502 384.8