Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00324 ATGGCATCCTCCAATGGTGGTGTGCCGCCGGGATTTAGGTTTCATCCGACGGATGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTTCAGAAGTTTGACATGGATGTTATTCGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGTAGAATTGGATCGACTCCACAAAACGAATGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACAAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGGAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACTCTTGTGTTTTACAAAGGAAGAGCCCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGTCTAGAAGATGGCAATGACCCTCAAGGAAGTGCCAATGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATACAAGATTGGAAATGAAGGTGGCTCTACACATAACCAAGATCAACAAATGAACAATTCCTCAAGCACTAATGGACGCTCCTTCGTACACAGAGAGAATCATTACTTACAACACCAACAGCAAAATCCAAGGAACTCATCAGGGCTTGAGCTTGATAAGCCTGAGCTGGCTCTCCATTACCCACACTTGCAAAATCCCCAATACTCACTCTTCCAATCCCAGCCTCTTTTTCAGGCCCAAAAACCCATGGTTTATGATTATTCATATGCATCGTCTCTACCTTCAGACACGCCTATCATGGCAAAGCAACTCATGGCAAACCCTAGGGACTGTGAGAGCGGGAGCGATGGCCTAAGATACCAAGTTTCGGAGTCTGGAATGGAAGTTGGATCGTGTGAACCAAATCAAGAAATGGGTGGCGGAAGAGGCGAAGGAATAAACGAATGGGGTGTTCTTGATAGGCTAGTTACCTCTCATCTTGGAAACGAAGACTCAAACAAAGGGGTGAGGTTTGAGGAGGCAAATCCACAAGCTGTGCATCAGATCAACCAGCTTTCATTACGGGGAGAAATGGACTTCTGGGCCTATGGAGGAAAGCAATGA 1089 0.4509 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQGSANEDGWVVCRVFKKKNLYKIGNEGGSTHNQDQQMNNSSSTNGRSFVHRENHYLQHQQQNPRNSSGLELDKPELALHYPHLQNPQYSLFQSQPLFQAQKPMVYDYSYASSLPSDTPIMAKQLMANPRDCESGSDGLRYQVSESGMEVGSCEPNQEMGGGRGEGINEWGVLDRLVTSHLGNEDSNKGVRFEEANPQAVHQINQLSLRGEMDFWAYGGKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00324 362 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Spst11g00324 362 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Spst11g00324 362 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Spst11g00324 362 FunFam NAC domain-containing protein 17 163 - -
Spst11g00324 362 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Spst11g00324 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 214 - -
Spst11g00324 362 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00324 Spst-Chr11 11181592 11184238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00324 1 355 NAC Transcription Factor Family AT1G33280 54.722 1.41e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst11g00324 NAM 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00324 - - gmx:100804181 697.197