Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00317 ATGACTCCAGTTAATTTGGCAGGCCAGTTCGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCGGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTAATTGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAACCTTCAACCCCAAAGCATGGAGGCGGAGGGAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGCGGGGGAGTGGGATCGGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTACAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTACGGAGGAGCGACAGCTCAGTACCCGGTTTATGGAAGTGGGCCAGGAGGGATGATGACGGGTGCTGCAGCGTTTTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGTGGTGGCACAAGCGGTGGGTATAGTTCCGGGCAGGGTTATGGTGTGAACTATCCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGGGCAACACTATGGAACACCCATGTCTCTTGCTCCTTCCCCAGCCTTGCAATCAGTGTGTTTCGCTGTGCCGCAGGCGTGA 804 0.5162 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYPPHLFQYSPIASTAAGAYGQHYGTPMSLAPSPALQSVCFAVPQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00317 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Spst11g00317 267 SMART rrm1_1 17 89 IPR000504 GO:0003723
Spst11g00317 267 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Spst11g00317 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Spst11g00317 267 Gene3D - 7 112 IPR012677 -
Spst11g00317 267 PANTHER BOULE-RELATED 6 239 - -
Spst11g00317 267 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Spst11g00317 267 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00317 Spst-Chr11 10970446 10974214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00317 12 195 C2H2 Transcription Factor Family AT2G19380 31.068 6.52e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00317 - - gmx:100779046 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00317 11 10970446 10974214 Spst11g00317 11 10970446 10974214 ECH