Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00313 ATGGCAGCTTTACTCCTTAATCGCTCTTTCTTCTGCTACCTCTTCCTTTTCCTCTTTTGTCTTCCACCTATAAACACACTCTCCACTGTTTCCATTTCTCAACCTTCCAATTCCAACAACCAAACATTTATTTGTGTCTTGCAAGGTCCAAATCAACAAGGACAATCAAATCTCAACTGTACCACCTTTCCTCGGTCTCAGACTCAGGCTATTAGACTTGATGCGAATCCAAATGTTTCCTACTCTCAGATTGTGGGCGGCAACGGGTTTGTGTGCGCTTTAGGGCCATCATCTTCTTCTATCTCCGTGATGGGCTGTTGGAGATTTTCTGCCAATGCTACCAATGTTCCCTATAGACGCATCTACAATGGACCCCTTCTCCAAGATATTGACAGTAGCAACTCCCACGTTTGCGGTCTTGTAAATAATGACAGTAGCCTTCAGCTTCAGTGCTGGCAATGGCATGACTTCAATTCGAGCAGTGGGAGTGTGAGGAACATGTCAATGTCGAGCATTGCCGTGGGAGAGAATTTTGTGTGTGGATTATCGCCGAGGGGGGATGTAAATTGTACGGGCACGGGGAGGGTTAATAGTAGCAGAGTTGTTGTTGGTGTCCCTGCGCCTGGTGGGAATTACACTTTTCTCGCAGCTGGGTTTAGGCATGCCTGTGTCCTCTCCAGGAATGGTAGTTTGCTTTGCTGGGGAGACATGGAGGGTGAGACACCCCAAGGGAGGTTCGTTTCTTTGGCGTTGGGAGAGAACCGGAGCTGTGCACTTGGGCACGACAGAAGAGTTGTCTGTTGGGGGTCCAATAATTTCATCATCCCACACACTTTGCGAGACACTTTTTTTGAGTCAATTGTGGCAAAACAAAGTGTTTTCTGCGGAGTCGTGTCTGCCAATTATTCTTTGCTCTGTTGGGGTTCTCAATTTTTTGAGTCAGACAGCAAGGTGTTTGACGATGTTCTCCCAGGACCTTGTAGGAACCAGTGCCCGTGTGGGCCCTTGCCCGACTCTGCCAAACTATGTCACTCTCCTGCCGTAATTTGCCAACCCTGTTCCCCTGAAGTGGTTCAATCTTCATCTCCACCTCCACCACCATCATCAAACCACACTGGTTGGAGCAGACAAATGGTCGCATTCCTAGTTGTTGGTTGTGTGGGTTGCAGTTCCCTGTTGCTAGTCATGGCTTTCTTCCTTCACAGGTATTGCAACTCTAAACGCGGAGGAAGCCGTGTCCATGACTCTGGCCGGTTGGACGGGTCATCCCACTCTCAATCACAGCCTCAAGCTGAAGCTGGATCCCGGGTTCTTCAGAAGCGTTTGAGCCACGTGATCAGCATGGGAAATGGGAGCCCGTTGGAGGAGTTTTCCCTCGACACACTGCTTCGAATCACCAACAGCTTCTGCGAGGACAACAGAATTGGGATTGGCAGCTTCGGTTCGGTGTATCATGCGATTTTGGAGGACGGGAAGGAGGTGGCTATAAAAAGAGCCGAAGCCTCATCCTCCACCTACACTGTCTTGGGTGCCCAGTTGGACAAAGACAATGCGTTCGTGAACGAGCTTGAATCTCTGTCCAGACTCCACCACAAGAACCTGGTCCGCTTGGTGGGGTTCTATGAAGACACTAAAGAACGCATTTTGGTGTACGAGTACATGGACAATGGGAGCCTGAGTGACCATCTCCACAAGCTCCAAACTTCAGCTCTCATGTCATGGCCGGTGCGCATCAAGGTGGCTCTGGATGCTGCCAGAGGCGTGGAGTACTTGCACCAATACGCCACTCCACCAGTCATCCACCGTGACATCAAGTCTGCCAACATATTATTGGATGCCAAGTGGACTGCCAAGGTCTCTGATTTTGGACTCTCCCTAATGGGACCTGACCCTGAAGATGAGGAGGCCCACCTTTCACTTCTGGCCGCTGGCACTGTTGGCTACATGGACCCTGAATACTACAGGCTTCAACATTTGACCCCCAAGAGTGACGTCTACAGCTTCGGCGTGGTTTTGCTAGAGTTGCTCTCTGGCTACAAGGCCATTCATAAAAACGAGAATGGGGTGCCAAGAAATGTGGTTGATTTTGTGGTTCCATTCATTGTTCAAGATGAGATTCACAGAGTGTTGGACAAAAGAGTGCCCCCTCCCACGCCTTTTGAGATAGAGGCCGTGGCGTTTGTGGGTTATTTGGCAGCAGATTGCGTCAGGCTGGAAGGTCGAGACAGACCAACCATGTCCCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCCCAACCAATACTCTCCAGGTCCACCACTCACTCTTCTCAATAG 2328 0.4974 MAALLLNRSFFCYLFLFLFCLPPINTLSTVSISQPSNSNNQTFICVLQGPNQQGQSNLNCTTFPRSQTQAIRLDANPNVSYSQIVGGNGFVCALGPSSSSISVMGCWRFSANATNVPYRRIYNGPLLQDIDSSNSHVCGLVNNDSSLQLQCWQWHDFNSSSGSVRNMSMSSIAVGENFVCGLSPRGDVNCTGTGRVNSSRVVVGVPAPGGNYTFLAAGFRHACVLSRNGSLLCWGDMEGETPQGRFVSLALGENRSCALGHDRRVVCWGSNNFIIPHTLRDTFFESIVAKQSVFCGVVSANYSLLCWGSQFFESDSKVFDDVLPGPCRNQCPCGPLPDSAKLCHSPAVICQPCSPEVVQSSSPPPPPSSNHTGWSRQMVAFLVVGCVGCSSLLLVMAFFLHRYCNSKRGGSRVHDSGRLDGSSHSQSQPQAEAGSRVLQKRLSHVISMGNGSPLEEFSLDTLLRITNSFCEDNRIGIGSFGSVYHAILEDGKEVAIKRAEASSSTYTVLGAQLDKDNAFVNELESLSRLHHKNLVRLVGFYEDTKERILVYEYMDNGSLSDHLHKLQTSALMSWPVRIKVALDAARGVEYLHQYATPPVIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIVQDEIHRVLDKRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPILSRSTTHSSQ 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00313 775 Pfam Regulator of chromosome condensation (RCC1) repeat 215 236 - -
Spst11g00313 775 FunFam PTI1-like tyrosine-protein kinase 3 554 763 - -
Spst11g00313 775 SUPERFAMILY Protein kinase-like (PK-like) 444 753 IPR011009 -
Spst11g00313 775 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Spst11g00313 775 Gene3D Transferase(Phosphotransferase) domain 1 554 763 - -
Spst11g00313 775 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 176 763 IPR044815 GO:0004674
Spst11g00313 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Spst11g00313 775 SMART serkin_6 469 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00313 775 ProSiteProfiles Protein kinase domain profile. 469 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00313 775 CDD STKc_IRAK 475 755 - -
Spst11g00313 775 Gene3D Phosphorylase Kinase; domain 1 430 553 - -
Spst11g00313 775 MobiDBLite consensus disorder prediction 409 434 - -
Spst11g00313 775 SUPERFAMILY RCC1/BLIP-II 72 310 IPR009091 -
Spst11g00313 775 MobiDBLite consensus disorder prediction 420 434 - -
Spst11g00313 775 Pfam Protein kinase domain 471 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00313 775 Gene3D - 128 334 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00313 Spst-Chr11 10950280 10952607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00313 26 772 Receptor kinase-like Gene Family AT5G47850 49.804 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Spst11g00313 Pkinase 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00313 - - pvu:PHAVU_011G003100g 1393.64